38 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	brca1	Uncharacterized protein. (1316 aa)
	ankrd11	Ankyrin repeat domain 11. (2825 aa)
	LOC103134877	STAM binding protein b. (434 aa)
	ENSPFOP00000011005	BRISC and BRCA1 A complex member 2. (331 aa)
	LOC103135087	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (792 aa)
	babam1	BRISC and BRCA1 A complex member 1. (382 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	ENSPFOP00000014564	E1A binding protein p300 b. (2474 aa)
	mysm1	Myb-like, SWIRM and MPN domains 1. (837 aa)
	ENSPFOP00000015461	Histone H2A; Belongs to the histone H2A family. (152 aa)
	ENSPFOP00000015483	Histone H2A; Belongs to the histone H2A family. (142 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	LOC103133711	KxDL motif containing 1. (185 aa)
	LOC103154044	Histone H2A; Belongs to the histone H2A family. (128 aa)
	mpnd	MPN domain containing. (451 aa)
	ENSPFOP00000017948	Abraxas 2, BRISC complex subunit. (450 aa)
	ubb	Ubiquitin B. (259 aa)
	LOC103144615	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC103144615-2	Histone H2A-like. (128 aa)
	LOC103145667	Histone H2A; Belongs to the histone H2A family. (142 aa)
	LOC103140171	Histone H2A. (128 aa)
	ENSPFOP00000020763	BRCA1/BRCA2-containing complex, subunit 3. (266 aa)
	ENSPFOP00000020889	Histone H2A; Belongs to the histone H2A family. (142 aa)
	LOC103130468	Histone H2A; Belongs to the histone H2A family. (128 aa)
	LOC103130468-2	Histone H2A-like. (128 aa)
	ENSPFOP00000021397	Reverse transcriptase domain-containing protein. (784 aa)
	ENSPFOP00000021913	USP8_dimer domain-containing protein. (144 aa)
	ENSPFOP00000023229	Uncharacterized protein. (235 aa)
	ENSPFOP00000028055	Reverse transcriptase domain-containing protein. (432 aa)
	ENSPFOP00000028108	Uncharacterized protein. (799 aa)
	ENSPFOP00000028624	Uncharacterized protein. (984 aa)
	STAMBPL1	STAM binding protein like 1. (300 aa)
	ENSPFOP00000028950	Reverse transcriptase domain-containing protein. (609 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ENSPFOP00000002331	Abraxas 1, BRCA1 A complex subunit. (350 aa)
	ankrd12	Ankyrin repeat domain 12. (1822 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (512 aa)
	LOC103132215	Ubiquitin-like domain-containing protein. (331 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000002331	ENSPFOP00000011005	ENSPFOP00000002331	ENSPFOP00000011005	Abraxas 1, BRCA1 A complex subunit.	BRISC and BRCA1 A complex member 2.	0.666
ENSPFOP00000002331	ENSPFOP00000020763	ENSPFOP00000002331	ENSPFOP00000020763	Abraxas 1, BRCA1 A complex subunit.	BRCA1/BRCA2-containing complex, subunit 3.	0.661
ENSPFOP00000002331	ENSPFOP00000021397	ENSPFOP00000002331	ENSPFOP00000021397	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.540
ENSPFOP00000002331	ENSPFOP00000023229	ENSPFOP00000002331	ENSPFOP00000023229	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.467
ENSPFOP00000002331	ENSPFOP00000028055	ENSPFOP00000002331	ENSPFOP00000028055	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.540
ENSPFOP00000002331	ENSPFOP00000028108	ENSPFOP00000002331	ENSPFOP00000028108	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.598
ENSPFOP00000002331	ENSPFOP00000028950	ENSPFOP00000002331	ENSPFOP00000028950	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.498
ENSPFOP00000002331	LOC103132215	ENSPFOP00000002331	ENSPFOP00000004063	Abraxas 1, BRCA1 A complex subunit.	Ubiquitin-like domain-containing protein.	0.404
ENSPFOP00000002331	babam1	ENSPFOP00000002331	ENSPFOP00000011416	Abraxas 1, BRCA1 A complex subunit.	BRISC and BRCA1 A complex member 1.	0.793
ENSPFOP00000002331	brca1	ENSPFOP00000002331	ENSPFOP00000004695	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.899
ENSPFOP00000002331	rps27a	ENSPFOP00000002331	ENSPFOP00000013174	Abraxas 1, BRCA1 A complex subunit.	Ribosomal protein S27a.	0.404
ENSPFOP00000011005	ENSPFOP00000002331	ENSPFOP00000011005	ENSPFOP00000002331	BRISC and BRCA1 A complex member 2.	Abraxas 1, BRCA1 A complex subunit.	0.666
ENSPFOP00000011005	ENSPFOP00000015461	ENSPFOP00000011005	ENSPFOP00000015461	BRISC and BRCA1 A complex member 2.	Histone H2A; Belongs to the histone H2A family.	0.625
ENSPFOP00000011005	ENSPFOP00000015483	ENSPFOP00000011005	ENSPFOP00000015483	BRISC and BRCA1 A complex member 2.	Histone H2A; Belongs to the histone H2A family.	0.625
ENSPFOP00000011005	ENSPFOP00000017948	ENSPFOP00000011005	ENSPFOP00000017948	BRISC and BRCA1 A complex member 2.	Abraxas 2, BRISC complex subunit.	0.997
ENSPFOP00000011005	ENSPFOP00000020763	ENSPFOP00000011005	ENSPFOP00000020763	BRISC and BRCA1 A complex member 2.	BRCA1/BRCA2-containing complex, subunit 3.	0.999
ENSPFOP00000011005	ENSPFOP00000020889	ENSPFOP00000011005	ENSPFOP00000020889	BRISC and BRCA1 A complex member 2.	Histone H2A; Belongs to the histone H2A family.	0.625
ENSPFOP00000011005	ENSPFOP00000021397	ENSPFOP00000011005	ENSPFOP00000021397	BRISC and BRCA1 A complex member 2.	Reverse transcriptase domain-containing protein.	0.963
ENSPFOP00000011005	ENSPFOP00000023229	ENSPFOP00000011005	ENSPFOP00000023229	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.947
ENSPFOP00000011005	ENSPFOP00000028055	ENSPFOP00000011005	ENSPFOP00000028055	BRISC and BRCA1 A complex member 2.	Reverse transcriptase domain-containing protein.	0.963