STRINGSTRING
blm blm ENSPFOP00000030884 ENSPFOP00000030884 ENSPFOP00000029491 ENSPFOP00000029491 ENSPFOP00000028950 ENSPFOP00000028950 ENSPFOP00000028108 ENSPFOP00000028108 ENSPFOP00000028055 ENSPFOP00000028055 LOC103130469-2 LOC103130469-2 ENSPFOP00000025830 ENSPFOP00000025830 tdrd3 tdrd3 ENSPFOP00000023229 ENSPFOP00000023229 ENSPFOP00000023184 ENSPFOP00000023184 palb2 palb2 rad51ap1 rad51ap1 ENSPFOP00000021872 ENSPFOP00000021872 ENSPFOP00000021397 ENSPFOP00000021397 LOC103133374-5 LOC103133374-5 LOC103154042-3 LOC103154042-3 LOC103154042-2 LOC103154042-2 LOC103133374-4 LOC103133374-4 LOC103144613-3 LOC103144613-3 LOC103144613-2 LOC103144613-2 ENSPFOP00000020763 ENSPFOP00000020763 ENSPFOP00000020401 ENSPFOP00000020401 LOC103153205 LOC103153205 LOC103133374-3 LOC103133374-3 LOC103133374-2 LOC103133374-2 abl1 abl1 ENSPFOP00000019748 ENSPFOP00000019748 ppp4c ppp4c GEN1 GEN1 topbp1 topbp1 LOC103144707 LOC103144707 rnf8 rnf8 ENSPFOP00000018931 ENSPFOP00000018931 ubb ubb chek1 chek1 ccna2 ccna2 ENSPFOP00000018137 ENSPFOP00000018137 LOC103130469 LOC103130469 LOC103154042 LOC103154042 tipin tipin rad52 rad52 ENSPFOP00000017410 ENSPFOP00000017410 LOC103134676 LOC103134676 LOC103133711 LOC103133711 rhno1 rhno1 LOC103149513 LOC103149513 RCBTB1 RCBTB1 LOC103129309 LOC103129309 pold2 pold2 UBE2N UBE2N nbn nbn LOC103155113 LOC103155113 ENSPFOP00000015694 ENSPFOP00000015694 pole3 pole3 LOC103133374 LOC103133374 EME2 EME2 ENSPFOP00000015340 ENSPFOP00000015340 ube2i ube2i rfc5 rfc5 polh polh pold3 pold3 ENSPFOP00000014766 ENSPFOP00000014766 pole pole ENSPFOP00000014489 ENSPFOP00000014489 ENSPFOP00000014388 ENSPFOP00000014388 rfc3 rfc3 ENSPFOP00000014359 ENSPFOP00000014359 rad51 rad51 rpa2 rpa2 LOC103148896 LOC103148896 ENSPFOP00000013687 ENSPFOP00000013687 ENSPFOP00000013426 ENSPFOP00000013426 cdca7 cdca7 rps27a rps27a sirt6 sirt6 sumo2 sumo2 RPA1 RPA1 rmi2 rmi2 rad51c rad51c babam1 babam1 pold4 pold4 ENSPFOP00000011005 ENSPFOP00000011005 pcna pcna rfc1 rfc1 rnf169 rnf169 kat5 kat5 FEN1 FEN1 rad9a rad9a rpa3 rpa3 mus81 mus81 rad1 rad1 ENSPFOP00000008634 ENSPFOP00000008634 cdk2 cdk2 pold1 pold1 LOC103132650 LOC103132650 pole2 pole2 LOC103144021 LOC103144021 LOC103147141 LOC103147141 LOC103152896 LOC103152896 rnf168 rnf168 ENSPFOP00000006168 ENSPFOP00000006168 rfc2 rfc2 recql4 recql4 LOC103152057 LOC103152057 rfc4 rfc4 ENSPFOP00000000215 ENSPFOP00000000215 uba52 uba52 ENSPFOP00000001341 ENSPFOP00000001341 pias4 pias4 brca2 brca2 ENSPFOP00000001647 ENSPFOP00000001647 cdca7l cdca7l rad51d rad51d LOC103144613 LOC103144613 ENSPFOP00000002084 ENSPFOP00000002084 ENSPFOP00000002331 ENSPFOP00000002331 ENSPFOP00000002397 ENSPFOP00000002397 exo1 exo1 ankrd12 ankrd12 ENSPFOP00000002611 ENSPFOP00000002611 parp3 parp3 sirt7 sirt7 ppp4r2 ppp4r2 ENSPFOP00000003275 ENSPFOP00000003275 LOC103150116 LOC103150116 rad50 rad50 ENSPFOP00000003632 ENSPFOP00000003632 parp2 parp2 LOC103132215 LOC103132215 rpa1 rpa1 pole4 pole4 brca1 brca1 exd2 exd2 xrcc1 xrcc1 hus1 hus1 ENSPFOP00000004987 ENSPFOP00000004987 LOC103142380 LOC103142380 ENSPFOP00000005090 ENSPFOP00000005090 slf1 slf1 ankrd11 ankrd11
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
blmBLM RecQ like helicase. (1366 aa)
ENSPFOP00000030884Small ubiquitin like modifier 3b. (141 aa)
ENSPFOP00000029491Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (111 aa)
ENSPFOP00000028950Reverse transcriptase domain-containing protein. (609 aa)
ENSPFOP00000028108Uncharacterized protein. (799 aa)
ENSPFOP00000028055Reverse transcriptase domain-containing protein. (432 aa)
LOC103130469-2Histone H2B 1/2-like. (124 aa)
ENSPFOP00000025830Uncharacterized protein. (2090 aa)
tdrd3Tudor domain containing 3. (786 aa)
ENSPFOP00000023229Uncharacterized protein. (235 aa)
ENSPFOP00000023184Uncharacterized protein. (679 aa)
palb2PALB2_WD40 domain-containing protein. (1340 aa)
rad51ap1RAD51 associated protein 1. (319 aa)
ENSPFOP00000021872RAD9 checkpoint clamp component B. (369 aa)
ENSPFOP00000021397Reverse transcriptase domain-containing protein. (784 aa)
LOC103133374-5Histone H4. (103 aa)
LOC103154042-3Histone H2B 1/2-like. (124 aa)
LOC103154042-2Histone H2B 1/2-like. (124 aa)
LOC103133374-4Histone H4. (103 aa)
LOC103144613-3Histone H2B 1/2. (124 aa)
LOC103144613-2Histone H2B 1/2. (124 aa)
ENSPFOP00000020763BRCA1/BRCA2-containing complex, subunit 3. (266 aa)
ENSPFOP00000020401Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC103153205Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC103133374-3Histone H4. (103 aa)
LOC103133374-2Histone H4. (103 aa)
abl1Tyrosine-protein kinase. (1117 aa)
ENSPFOP00000019748Polymerase (DNA directed), theta. (2486 aa)
ppp4cSerine/threonine-protein phosphatase. (311 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (462 aa)
topbp1DNA topoisomerase II binding protein 1. (1515 aa)
LOC103144707ERCC4 domain-containing protein. (518 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (514 aa)
ENSPFOP00000018931RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (642 aa)
ubbUbiquitin B. (259 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (455 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (432 aa)
ENSPFOP00000018137Polymerase (DNA directed) kappa. (592 aa)
LOC103130469Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC103154042Histone H2B; Belongs to the histone H2B family. (124 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (301 aa)
rad52RAD52 homolog, DNA repair protein. (424 aa)
ENSPFOP00000017410Uncharacterized protein. (573 aa)
LOC103134676Uncharacterized protein. (763 aa)
LOC103133711KxDL motif containing 1. (185 aa)
rhno1Si:ch73-352p4.5. (291 aa)
LOC103149513Zgc:110269. (351 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
LOC103129309UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
UBE2NUbiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (163 aa)
nbnNibrin. (843 aa)
LOC103155113Small ubiquitin-related modifier. (94 aa)
ENSPFOP00000015694Cyclin A1; Belongs to the cyclin family. (419 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (150 aa)
LOC103133374Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
EME2ERCC4 domain-containing protein. (435 aa)
ENSPFOP00000015340Uncharacterized protein. (1194 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
polhPolymerase (DNA directed), eta. (776 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (438 aa)
ENSPFOP00000014766DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (977 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2299 aa)
ENSPFOP00000014489Uncharacterized protein. (827 aa)
ENSPFOP00000014388Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
ENSPFOP00000014359Methionine sulfoxide reductase B1b. (471 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (338 aa)
rpa2Replication protein A2. (278 aa)
LOC103148896Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (264 aa)
ENSPFOP00000013687ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2661 aa)
ENSPFOP00000013426Histone H2B; Belongs to the histone H2B family. (122 aa)
cdca7Cell division cycle associated 7a. (401 aa)
rps27aRibosomal protein S27a. (156 aa)
sirt6Sirtuin 6. (390 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (591 aa)
rmi2RecQ mediated genome instability 2. (146 aa)
rad51cRAD51 paralog C. (357 aa)
babam1BRISC and BRCA1 A complex member 1. (382 aa)
pold4Si:dkey-28b4.7. (108 aa)
ENSPFOP00000011005BRISC and BRCA1 A complex member 2. (331 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (310 aa)
rfc1Replication factor C subunit 1. (1166 aa)
rnf169Ring finger protein 169. (574 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (560 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (384 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (386 aa)
rpa3Replication protein A3. (122 aa)
mus81MUS81 structure-specific endonuclease subunit. (635 aa)
rad1RAD1 homolog (S. pombe). (279 aa)
ENSPFOP00000008634Timeless circadian clock. (1126 aa)
cdk2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
pold1DNA polymerase. (1109 aa)
LOC103132650Tumor protein p53 binding protein, 1. (1538 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (534 aa)
LOC103144021Uncharacterized protein. (439 aa)
LOC103147141Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
LOC103152896Essential meiotic structure-specific endonuclease 1. (519 aa)
rnf168Ring finger protein 168. (431 aa)
ENSPFOP00000006168ATM serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (3081 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
recql4RecQ helicase-like 4. (1494 aa)
LOC103152057Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
rfc4Replication factor C (activator 1) 4. (357 aa)
ENSPFOP00000000215RAD17 checkpoint clamp loader component. (627 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
ENSPFOP00000001341RECA_2 domain-containing protein. (301 aa)
pias4Protein inhibitor of activated STAT, 4a. (509 aa)
brca2BRCA2 DNA repair associated. (3036 aa)
ENSPFOP00000001647Uncharacterized protein. (468 aa)
cdca7lCell division cycle associated 7b. (401 aa)
rad51dRAD51 paralog D. (333 aa)
LOC103144613Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSPFOP00000002084DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (346 aa)
ENSPFOP00000002331Abraxas 1, BRCA1 A complex subunit. (350 aa)
ENSPFOP00000002397DNA ligase. (924 aa)
exo1Exonuclease 1. (769 aa)
ankrd12Ankyrin repeat domain 12. (1822 aa)
ENSPFOP00000002611Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
parp3Poly [ADP-ribose] polymerase. (522 aa)
sirt7Sirtuin 7. (409 aa)
ppp4r2Protein phosphatase 4, regulatory subunit 2b. (415 aa)
ENSPFOP00000003275Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (722 aa)
LOC103150116Small ubiquitin-related modifier. (96 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
ENSPFOP00000003632Nuclear receptor binding SET domain protein 2. (1301 aa)
parp2Poly [ADP-ribose] polymerase. (650 aa)
LOC103132215Ubiquitin-like domain-containing protein. (331 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (131 aa)
brca1Uncharacterized protein. (1316 aa)
exd2Exonuclease 3'-5' domain containing 2. (639 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
ENSPFOP00000004987UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (123 aa)
LOC103142380RPA_C domain-containing protein. (255 aa)
ENSPFOP00000005090SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1444 aa)
slf1SMC5-SMC6 complex localization factor 1. (880 aa)
ankrd11Ankyrin repeat domain 11. (2825 aa)
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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