STRINGSTRING
gtf2b gtf2b cdk7 cdk7 LOC103145803 LOC103145803 LOC103155672 LOC103155672 taf5 taf5 ENSPFOP00000006865 ENSPFOP00000006865 ENSPFOP00000006983 ENSPFOP00000006983 nelfa nelfa aff4 aff4 ELOB ELOB taf2 taf2 ENSPFOP00000007709 ENSPFOP00000007709 polr2a polr2a ENSPFOP00000008518 ENSPFOP00000008518 LOC103145653 LOC103145653 polr2d polr2d CCNK CCNK LOC103152281 LOC103152281 TCEANC TCEANC ENSPFOP00000003873 ENSPFOP00000003873 mnat1 mnat1 ENSPFOP00000004097 ENSPFOP00000004097 NCBP1 NCBP1 ENSPFOP00000004460 ENSPFOP00000004460 polr2l polr2l paf1 paf1 mllt3 mllt3 tcea1 tcea1 cdk9 cdk9 POLR2E POLR2E leo1 leo1 eloa eloa nelfe nelfe ENSPFOP00000002819 ENSPFOP00000002819 ENSPFOP00000002806 ENSPFOP00000002806 ENSPFOP00000002792 ENSPFOP00000002792 supt16h supt16h slc39a13 slc39a13 ell ell gtf2a1 gtf2a1 ENSPFOP00000001063 ENSPFOP00000001063 LOC103130849 LOC103130849 ccnt2 ccnt2 polr2f polr2f gtf2a2 gtf2a2 ENSPFOP00000018214 ENSPFOP00000018214 eaf1 eaf1 supt4h1 supt4h1 ENSPFOP00000018781 ENSPFOP00000018781 gtf2h5 gtf2h5 taf13 taf13 gtf2h1 gtf2h1 polr2h polr2h ENSPFOP00000027035 ENSPFOP00000027035 ENSPFOP00000030851 ENSPFOP00000030851 polr2c polr2c LOC103134070 LOC103134070 ssrp1 ssrp1 ENSPFOP00000009506 ENSPFOP00000009506 IWS1 IWS1 TAF4 TAF4 ENSPFOP00000010827 ENSPFOP00000010827 gtf2f1 gtf2f1 tceanc2 tceanc2 supt6h supt6h ENSPFOP00000011510 ENSPFOP00000011510 taf10 taf10 ctr9 ctr9 ENSPFOP00000011898 ENSPFOP00000011898 polr2j polr2j taf5l taf5l ENSPFOP00000012455 ENSPFOP00000012455 ENSPFOP00000003440 ENSPFOP00000003440 ctdp1 ctdp1 taf3 taf3 LOC103148202 LOC103148202 eloc eloc ENSPFOP00000013383 ENSPFOP00000013383 LOC103148213 LOC103148213 taf7 taf7 polr2b polr2b polr2i polr2i gtf2e2 gtf2e2 ccnq ccnq eaf2 eaf2 gtf2f2 gtf2f2 ercc3 ercc3 ENSPFOP00000014349 ENSPFOP00000014349 wdr61 wdr61 ENSPFOP00000014516 ENSPFOP00000014516 taf12 taf12 ENSPFOP00000014732 ENSPFOP00000014732 mllt1 mllt1 ENSPFOP00000014830 ENSPFOP00000014830 ENSPFOP00000014865 ENSPFOP00000014865 ENSPFOP00000015203 ENSPFOP00000015203 LOC103141413 LOC103141413 nelfcd nelfcd taf11 taf11 ENSPFOP00000030966 ENSPFOP00000030966 ENSPFOP00000017193 ENSPFOP00000017193
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gtf2bGeneral transcription factor IIB. (318 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (360 aa)
LOC103145803TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (850 aa)
LOC103155672General transcription factor IIH, polypeptide 2. (255 aa)
taf5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (745 aa)
ENSPFOP00000006865Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (531 aa)
ENSPFOP00000006983Negative elongation factor complex member B. (481 aa)
nelfaNegative elongation factor complex member A. (547 aa)
aff4AF4/FMR2 family, member 4. (1102 aa)
ELOBElongin B. (119 aa)
taf2TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1219 aa)
ENSPFOP00000007709TFIIF_beta domain-containing protein. (140 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1907 aa)
ENSPFOP00000008518General transcription factor IIE, polypeptide 1, alpha. (463 aa)
LOC103145653TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
CCNKCyclin K; Belongs to the cyclin family. (562 aa)
LOC103152281Si:dkey-12j5.1. (415 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (317 aa)
ENSPFOP00000003873WD_REPEATS_REGION domain-containing protein. (316 aa)
mnat1MNAT1 component of CDK activating kinase. (308 aa)
ENSPFOP00000004097Uncharacterized protein. (181 aa)
NCBP1Nuclear cap binding protein subunit 1. (799 aa)
ENSPFOP00000004460Uncharacterized protein. (1108 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (530 aa)
mllt3MLLT3 super elongation complex subunit. (513 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
cdk9Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (631 aa)
eloaElongin A. (687 aa)
nelfeNegative elongation factor complex member E. (357 aa)
ENSPFOP00000002819Cyclin H; Belongs to the cyclin family. (334 aa)
ENSPFOP00000002806TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (252 aa)
ENSPFOP00000002792Cyclin H; Belongs to the cyclin family. (321 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1030 aa)
slc39a13Solute carrier family 39 member 13. (380 aa)
ellElongation factor RNA polymerase II. (645 aa)
gtf2a1General transcription factor IIA, 1. (393 aa)
ENSPFOP00000001063Uncharacterized protein. (294 aa)
LOC103130849TAFH domain-containing protein. (921 aa)
ccnt2Cyclin T2; Belongs to the cyclin family. (692 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
gtf2a2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
ENSPFOP00000018214General transcription factor IIH, polypeptide 3. (303 aa)
eaf1ELL associated factor 1. (259 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
ENSPFOP00000018781Cyclin-dependent kinase 2 interacting protein. (210 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
taf13TATA-box binding protein associated factor 13. (125 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSPFOP00000027035Uncharacterized protein. (138 aa)
ENSPFOP00000030851Uncharacterized protein. (83 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
LOC103134070Elongin A, like. (658 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
ENSPFOP00000009506Transcription elongation factor A (SII), 3. (540 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (740 aa)
TAF4TATA-box binding protein associated factor 4. (856 aa)
ENSPFOP00000010827TBP-like 1. (126 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
tceanc2Uncharacterized protein. (207 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1753 aa)
ENSPFOP00000011510Transcription elongation factor SPT5. (1004 aa)
taf10TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1154 aa)
ENSPFOP00000011898RTF1 homolog, Paf1/RNA polymerase II complex component. (664 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (118 aa)
taf5lTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (601 aa)
ENSPFOP00000012455General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (468 aa)
ENSPFOP00000003440TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1725 aa)
ctdp1CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1. (1004 aa)
taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (942 aa)
LOC103148202Transcription elongation factor A (SII), 2. (319 aa)
elocElongin C paralog a; Belongs to the SKP1 family. (112 aa)
ENSPFOP00000013383Elongin B. (118 aa)
LOC103148213Cyclin T1; Belongs to the cyclin family. (684 aa)
taf7TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
ccnqCyclin Q; Belongs to the cyclin family. (252 aa)
eaf2ELL associated factor 2. (264 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
ercc3Excision repair cross-complementation group 3. (780 aa)
ENSPFOP00000014349TAFH domain-containing protein. (953 aa)
wdr61WD repeat domain 61. (305 aa)
ENSPFOP00000014516Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (167 aa)
taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (131 aa)
ENSPFOP00000014732TAFH domain-containing protein. (1080 aa)
mllt1MLLT1 super elongation complex subunit a. (586 aa)
ENSPFOP00000014830TATA box binding protein. (315 aa)
ENSPFOP00000014865Uncharacterized protein. (54 aa)
ENSPFOP00000015203General transcription factor IIA, 1-like. (430 aa)
LOC103141413Cyclin T2b; Belongs to the cyclin family. (597 aa)
nelfcdNegative elongation factor complex member C/D. (578 aa)
taf11TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (208 aa)
ENSPFOP00000030966Polymerase (RNA) II (DNA directed) polypeptide G-like. (109 aa)
ENSPFOP00000017193Excision repair cross-complementation group 2. (760 aa)
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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