29 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1907 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	ENSPFOP00000001538	Polypyrimidine tract binding protein 3. (586 aa)
	hnrnpa1	Uncharacterized protein. (338 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (799 aa)
	ENSPFOP00000004497	Uncharacterized protein. (387 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	ptbp2	Polypyrimidine tract binding protein 2b. (523 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	ENSPFOP00000006110	Uncharacterized protein. (556 aa)
	ENSPFOP00000007709	TFIIF_beta domain-containing protein. (140 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1. (381 aa)
	ptbp1	Polypyrimidine tract binding protein 1a. (577 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (118 aa)
	hnrnpm	Heterogeneous nuclear ribonucleoprotein M. (580 aa)
	ENSPFOP00000014512	Epithelial splicing regulatory protein 2. (436 aa)
	ENSPFOP00000014516	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (167 aa)
	ENSPFOP00000014865	Uncharacterized protein. (54 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	esrp1	Epithelial splicing regulatory protein 1. (748 aa)
	LOC103142806	Epithelial splicing regulatory protein 2. (717 aa)
	ENSPFOP00000030966	Polymerase (RNA) II (DNA directed) polypeptide G-like. (109 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	LOC103135829	Cytotoxic granule-associated RNA binding protein 1, like. (386 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001538	ENSPFOP00000004497	ENSPFOP00000001538	ENSPFOP00000004497	Polypyrimidine tract binding protein 3.	Uncharacterized protein.	0.457
ENSPFOP00000001538	ENSPFOP00000007709	ENSPFOP00000001538	ENSPFOP00000007709	Polypyrimidine tract binding protein 3.	TFIIF_beta domain-containing protein.	0.591
ENSPFOP00000001538	ENSPFOP00000014516	ENSPFOP00000001538	ENSPFOP00000014516	Polypyrimidine tract binding protein 3.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.743
ENSPFOP00000001538	ENSPFOP00000030966	ENSPFOP00000001538	ENSPFOP00000030966	Polypyrimidine tract binding protein 3.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.613
ENSPFOP00000001538	LOC103135829	ENSPFOP00000001538	ENSPFOP00000027004	Polypyrimidine tract binding protein 3.	Cytotoxic granule-associated RNA binding protein 1, like.	0.457
ENSPFOP00000001538	NCBP1	ENSPFOP00000001538	ENSPFOP00000004402	Polypyrimidine tract binding protein 3.	Nuclear cap binding protein subunit 1.	0.658
ENSPFOP00000001538	POLR2E	ENSPFOP00000001538	ENSPFOP00000005657	Polypyrimidine tract binding protein 3.	RNA polymerase II subunit E.	0.612
ENSPFOP00000001538	gtf2f2	ENSPFOP00000001538	ENSPFOP00000015767	Polypyrimidine tract binding protein 3.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.591
ENSPFOP00000001538	hnrnpa1	ENSPFOP00000001538	ENSPFOP00000001746	Polypyrimidine tract binding protein 3.	Uncharacterized protein.	0.718
ENSPFOP00000001538	hnrnpm	ENSPFOP00000001538	ENSPFOP00000013730	Polypyrimidine tract binding protein 3.	Heterogeneous nuclear ribonucleoprotein M.	0.597
ENSPFOP00000001538	polr2a	ENSPFOP00000001538	ENSPFOP00000008106	Polypyrimidine tract binding protein 3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.671
ENSPFOP00000001538	polr2i	ENSPFOP00000001538	ENSPFOP00000016884	Polypyrimidine tract binding protein 3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.612
ENSPFOP00000001538	polr2l	ENSPFOP00000001538	ENSPFOP00000004518	Polypyrimidine tract binding protein 3.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.616
ENSPFOP00000001538	tial1	ENSPFOP00000001538	ENSPFOP00000009865	Polypyrimidine tract binding protein 3.	TIA1 cytotoxic granule-associated RNA binding protein-like 1.	0.457
ENSPFOP00000004497	ENSPFOP00000001538	ENSPFOP00000004497	ENSPFOP00000001538	Uncharacterized protein.	Polypyrimidine tract binding protein 3.	0.457
ENSPFOP00000004497	ENSPFOP00000006110	ENSPFOP00000004497	ENSPFOP00000006110	Uncharacterized protein.	Uncharacterized protein.	0.457
ENSPFOP00000004497	ENSPFOP00000007709	ENSPFOP00000004497	ENSPFOP00000007709	Uncharacterized protein.	TFIIF_beta domain-containing protein.	0.476
ENSPFOP00000004497	ENSPFOP00000014516	ENSPFOP00000004497	ENSPFOP00000014516	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.824
ENSPFOP00000004497	ENSPFOP00000014865	ENSPFOP00000004497	ENSPFOP00000014865	Uncharacterized protein.	Uncharacterized protein.	0.704
ENSPFOP00000004497	ENSPFOP00000030966	ENSPFOP00000004497	ENSPFOP00000030966	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.672