STRINGSTRING
ENSPFOP00000030966 ENSPFOP00000030966 zcrb1 zcrb1 sf3b3 sf3b3 gtf2f2 gtf2f2 snrpg snrpg ENSPFOP00000014865 ENSPFOP00000014865 snrnp70 snrnp70 snrpd2 snrpd2 polr2i polr2i polr2b polr2b ENSPFOP00000014516 ENSPFOP00000014516 txnl4a txnl4a ddx42 ddx42 sf3b6 sf3b6 SNRPD1 SNRPD1 ENSPFOP00000012280 ENSPFOP00000012280 polr2j polr2j ENSPFOP00000011845 ENSPFOP00000011845 ENSPFOP00000011455 ENSPFOP00000011455 gtf2f1 gtf2f1 snrnp25 snrnp25 rnpc3 rnpc3 ENSPFOP00000009592 ENSPFOP00000009592 LOC103148541 LOC103148541 polr2d polr2d pdcd7 pdcd7 srsf7 srsf7 eftud2 eftud2 polr2a polr2a snrnp40 snrnp40 ENSPFOP00000007709 ENSPFOP00000007709 prpf8 prpf8 YBX2 YBX2 ENSPFOP00000006735 ENSPFOP00000006735 sf3b4 sf3b4 POLR2E POLR2E snrpe snrpe polr2l polr2l NCBP1 NCBP1 snrnp48 snrnp48 sf3b2 sf3b2 polr2f polr2f sf3b1 sf3b1 snrnp200 snrnp200 ENSPFOP00000017379 ENSPFOP00000017379 LOC103138330 LOC103138330 LOC103140933 LOC103140933 snrpd3 snrpd3 zmat5 zmat5 snrnp35 snrnp35 sf3b5 sf3b5 srsf2 srsf2 ENSPFOP00000021005 ENSPFOP00000021005 polr2h polr2h polr2c polr2c
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSPFOP00000030966Polymerase (RNA) II (DNA directed) polypeptide G-like. (109 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
ENSPFOP00000014865Uncharacterized protein. (54 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (466 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ENSPFOP00000014516Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (167 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (925 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
ENSPFOP00000012280DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (807 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (118 aa)
ENSPFOP00000011845Small nuclear ribonucleoprotein-associated protein. (236 aa)
ENSPFOP00000011455Y box binding protein 1. (321 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (507 aa)
ENSPFOP00000009592Uncharacterized protein. (181 aa)
LOC103148541Serine and arginine rich splicing factor 1a. (245 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
pdcd7Programmed cell death 7. (514 aa)
srsf7Serine and arginine rich splicing factor 7b. (229 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1907 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
ENSPFOP00000007709TFIIF_beta domain-containing protein. (140 aa)
prpf8Pre-mRNA processing factor 8. (2358 aa)
YBX2Y-box binding protein 2. (327 aa)
ENSPFOP00000006735PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (982 aa)
sf3b4Splicing factor 3b, subunit 4. (394 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (114 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
NCBP1Nuclear cap binding protein subunit 1. (799 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (342 aa)
sf3b2Splicing factor 3b, subunit 2. (856 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
sf3b1Splicing factor 3b, subunit 1. (1316 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2137 aa)
ENSPFOP00000017379Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (449 aa)
LOC103138330Serine and arginine rich splicing factor 7a. (257 aa)
LOC103140933Uncharacterized protein. (279 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (222 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
srsf2Serine and arginine rich splicing factor 2a. (238 aa)
ENSPFOP00000021005Sm domain-containing protein. (46 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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