92 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103140783	Uncharacterized protein. (200 aa)
	rab42	Si:dkey-34d22.5. (222 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	LOC103153996	RAB10, member RAS oncogene family. (201 aa)
	LOC103147350	Si:dkey-13a21.4. (204 aa)
	LOC103156873	Uncharacterized protein. (223 aa)
	LOC103140484	RAB38b, member of RAS oncogene family. (218 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)
	ENSPFOP00000019063	RAS and EF-hand domain containing. (722 aa)
	RAB37	RAB37, member RAS oncogene family. (244 aa)
	rab3c	RAB3C, member RAS oncogene family. (219 aa)
	rab6a	RAB6A, member RAS oncogene family. (208 aa)
	RAB14	RAB14, member RAS oncogene family. (216 aa)
	LOC103135635	RAB9B, member RAS oncogene family. (202 aa)
	ENSPFOP00000020269	Uncharacterized protein. (219 aa)
	RAB41	RAB41, member RAS oncogene family. (211 aa)
	LOC103150818	RAB11a, member RAS oncogene family, like. (216 aa)
	rab25	RAB25, member RAS oncogene family b. (209 aa)
	LOC103135088	RAB5A, member RAS oncogene family, a. (216 aa)
	rab21	RAB21, member RAS oncogene family. (220 aa)
	cracr2b	Calcium release activated channel regulator 2B. (658 aa)
	ENSPFOP00000010622	RAB25, member RAS oncogene family a. (215 aa)
	LOC103154760	RAB27B, member RAS oncogene family. (218 aa)
	LOC103138865	Calcium release activated channel regulator 2A. (720 aa)
	LOC103140989	Uncharacterized protein. (252 aa)
	LOC103131161	RAB11a, member RAS oncogene family. (215 aa)
	LOC103136271	RAB4B, member RAS oncogene family. (213 aa)
	LOC103134726	Zgc:101559. (234 aa)
	rab24	RAB24, member RAS oncogene family. (203 aa)
	rab33b	RAB33B, member RAS oncogene family a. (242 aa)
	rab3a	RAB3A, member RAS oncogene family, b. (219 aa)
	ENSPFOP00000000351	RAB5B, member RAS oncogene family. (216 aa)
	ENSPFOP00000000488	Uncharacterized protein. (207 aa)
	LOC103131877	Uncharacterized protein. (215 aa)
	LOC103146060	RAB8A, member RAS oncogene family. (206 aa)
	rab12	RAB12, member RAS oncogene family. (244 aa)
	rab34	RAB34, member RAS oncogene family a. (309 aa)
	LOC103156897	RAB3B, member RAS oncogene family. (217 aa)
	RAB6B	RAB6B, member RAS oncogene family. (217 aa)
	LOC103129196	RAB18A, member RAS oncogene family. (204 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	LOC103147851	Zgc:162879. (663 aa)
	RAB40C	RAB40C, member RAS oncogene family. (297 aa)
	LOC103144677	RAB37, member RAS oncogene family. (244 aa)
	ENSPFOP00000006175	Uncharacterized protein. (219 aa)
	LOC103155167	RAB11B, member RAS oncogene family, b. (218 aa)
	LOC103155165	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC103155714	Uncharacterized protein. (223 aa)
	ENSPFOP00000005472	Calcium release activated channel regulator 2Ab. (689 aa)
	rab30	RAB30, member RAS oncogene family. (203 aa)
	LOC103155917	RAB40c, member RAS oncogene family. (279 aa)
	LOC103147079	RAB40B, member RAS oncogene family. (290 aa)
	rab2a	RAB2A, member RAS oncogene family. (212 aa)
	LOC103142376	RAB42, member RAS oncogene family a. (265 aa)
	LOC103155910	Si:dkey-16l2.16. (209 aa)
	LOC103144640	Zgc:162171. (227 aa)
	rab39b	Uncharacterized protein. (213 aa)
	rab8b	Multiple EGF-like-domains 8. (207 aa)
	ENSPFOP00000004446	RAB38c, member of RAS oncogene family. (217 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	rab5a	RAB5A, member RAS oncogene family, b. (216 aa)
	ENSPFOP00000004104	Uncharacterized protein. (207 aa)
	LOC103149291	RAB33A, member RAS oncogene family. (281 aa)
	LOC103143223	Uncharacterized protein. (207 aa)
	LOC103151367	RAB6B, member RAS oncogene family a. (208 aa)
	LOC103145773	RAB7a, member RAS oncogene family. (207 aa)
	LOC103155016	RAB3D, member RAS oncogene family, b. (222 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	rab1a	Uncharacterized protein. (203 aa)
	ENSPFOP00000031278	Uncharacterized protein. (315 aa)
	rab5c-2	RAB5C, member RAS oncogene family. (220 aa)
	LOC103147000	Uncharacterized protein. (218 aa)
	LOC103156891	Uncharacterized protein. (176 aa)
	ENSPFOP00000023432	Uncharacterized protein. (215 aa)
	LOC103132807	Uncharacterized protein. (240 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	rab23	RAB23, member RAS oncogene family. (235 aa)
	LOC103139539	RAB34, member RAS oncogene family b. (255 aa)
	LOC103130761	Uncharacterized protein. (219 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	ENSPFOP00000012635	ZRAB1B, member RAS oncogene family a. (214 aa)
	RAB19	RAB19, member RAS oncogene family. (235 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	ENSPFOP00000013048	RAB22A, member RAS oncogene family. (164 aa)
	RAB29	RAB29, member RAS oncogene family. (208 aa)
	LOC103136134	RAB15, member RAS oncogene family. (210 aa)
	LOC103140057	RAB18B, member RAS oncogene family. (205 aa)
	LOC103137736	Uncharacterized protein. (221 aa)
	ENSPFOP00000013841	Zgc:171927. (217 aa)
	LOC103131647	Uncharacterized protein. (206 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000351	ENSPFOP00000000488	ENSPFOP00000000351	ENSPFOP00000000488	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.474
ENSPFOP00000000351	ENSPFOP00000004104	ENSPFOP00000000351	ENSPFOP00000004104	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.497
ENSPFOP00000000351	ENSPFOP00000010622	ENSPFOP00000000351	ENSPFOP00000010622	RAB5B, member RAS oncogene family.	RAB25, member RAS oncogene family a.	0.524
ENSPFOP00000000351	ENSPFOP00000012635	ENSPFOP00000000351	ENSPFOP00000012635	RAB5B, member RAS oncogene family.	ZRAB1B, member RAS oncogene family a.	0.477
ENSPFOP00000000351	ENSPFOP00000013841	ENSPFOP00000000351	ENSPFOP00000013841	RAB5B, member RAS oncogene family.	Zgc:171927.	0.478
ENSPFOP00000000351	ENSPFOP00000020269	ENSPFOP00000000351	ENSPFOP00000020269	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.672
ENSPFOP00000000351	ENSPFOP00000023432	ENSPFOP00000000351	ENSPFOP00000023432	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.437
ENSPFOP00000000351	LOC103129196	ENSPFOP00000000351	ENSPFOP00000007573	RAB5B, member RAS oncogene family.	RAB18A, member RAS oncogene family.	0.448
ENSPFOP00000000351	LOC103131161	ENSPFOP00000000351	ENSPFOP00000009278	RAB5B, member RAS oncogene family.	RAB11a, member RAS oncogene family.	0.578
ENSPFOP00000000351	LOC103131647	ENSPFOP00000000351	ENSPFOP00000014312	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.494
ENSPFOP00000000351	LOC103131877	ENSPFOP00000000351	ENSPFOP00000001113	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.654
ENSPFOP00000000351	LOC103135088	ENSPFOP00000000351	ENSPFOP00000011266	RAB5B, member RAS oncogene family.	RAB5A, member RAS oncogene family, a.	0.487
ENSPFOP00000000351	LOC103135635	ENSPFOP00000000351	ENSPFOP00000020186	RAB5B, member RAS oncogene family.	RAB9B, member RAS oncogene family.	0.671
ENSPFOP00000000351	LOC103136134	ENSPFOP00000000351	ENSPFOP00000013206	RAB5B, member RAS oncogene family.	RAB15, member RAS oncogene family.	0.501
ENSPFOP00000000351	LOC103136271	ENSPFOP00000000351	ENSPFOP00000009096	RAB5B, member RAS oncogene family.	RAB4B, member RAS oncogene family.	0.619
ENSPFOP00000000351	LOC103139539	ENSPFOP00000000351	ENSPFOP00000011514	RAB5B, member RAS oncogene family.	RAB34, member RAS oncogene family b.	0.533
ENSPFOP00000000351	LOC103140057	ENSPFOP00000000351	ENSPFOP00000013519	RAB5B, member RAS oncogene family.	RAB18B, member RAS oncogene family.	0.448
ENSPFOP00000000351	LOC103140783	ENSPFOP00000000351	ENSPFOP00000014456	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.492
ENSPFOP00000000351	LOC103142376	ENSPFOP00000000351	ENSPFOP00000004716	RAB5B, member RAS oncogene family.	RAB42, member RAS oncogene family a.	0.507
ENSPFOP00000000351	LOC103143223	ENSPFOP00000000351	ENSPFOP00000003828	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.686