(21 nodes) Mixed, incl. VPS9 domain, and N-terminal extension of GAT domain network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GGA1	Uncharacterized protein. (638 aa)
	ENSPLAP00000002842	Uncharacterized protein. (235 aa)
	LOC106939465	RAB5C, member RAS oncogene family. (220 aa)
	rab5a	Uncharacterized protein. (216 aa)
	LOC106959233	Uncharacterized protein. (617 aa)
	LOC106952935	RAB guanine nucleotide exchange factor (GEF) 1, like. (508 aa)
	LOC106950324	RAB5B, member RAS oncogene family. (217 aa)
	rabep1	Rabaptin, RAB GTPase binding effector protein 1. (856 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (501 aa)
	eea1	Early endosome antigen 1. (1395 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1644 aa)
	ankfy1	Ankyrin repeat and FYVE domain containing 1. (957 aa)
	LOC106951453	Uncharacterized protein. (463 aa)
	rabep2	Rabaptin, RAB GTPase binding effector protein 2. (450 aa)
	LOC106950562	Ras-related protein Rab-5B-like. (217 aa)
	LOC106943164	Uncharacterized protein. (647 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1447 aa)
	LOC106950296	Uncharacterized protein. (1645 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (742 aa)
	LOC106949789	Uncharacterized protein. (223 aa)
	LOC106961574	RAB5A, member RAS oncogene family, a. (216 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000002842	GGA1	ENSPLAP00000002842	ENSPLAP00000000234	Uncharacterized protein.	Uncharacterized protein.	0.910
ENSPLAP00000002842	LOC106939465	ENSPLAP00000002842	ENSPLAP00000003345	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.459
ENSPLAP00000002842	LOC106943164	ENSPLAP00000002842	ENSPLAP00000022033	Uncharacterized protein.	Uncharacterized protein.	0.910
ENSPLAP00000002842	LOC106949789	ENSPLAP00000002842	ENSPLAP00000027605	Uncharacterized protein.	Uncharacterized protein.	0.459
ENSPLAP00000002842	LOC106950324	ENSPLAP00000002842	ENSPLAP00000009002	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.459
ENSPLAP00000002842	LOC106950562	ENSPLAP00000002842	ENSPLAP00000019889	Uncharacterized protein.	Ras-related protein Rab-5B-like.	0.459
ENSPLAP00000002842	LOC106959233	ENSPLAP00000002842	ENSPLAP00000004650	Uncharacterized protein.	Uncharacterized protein.	0.910
ENSPLAP00000002842	LOC106961574	ENSPLAP00000002842	ENSPLAP00000028447	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.459
ENSPLAP00000002842	rab5a	ENSPLAP00000002842	ENSPLAP00000004042	Uncharacterized protein.	Uncharacterized protein.	0.459
GGA1	ENSPLAP00000002842	ENSPLAP00000000234	ENSPLAP00000002842	Uncharacterized protein.	Uncharacterized protein.	0.910
GGA1	LOC106939465	ENSPLAP00000000234	ENSPLAP00000003345	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.580
GGA1	LOC106943164	ENSPLAP00000000234	ENSPLAP00000022033	Uncharacterized protein.	Uncharacterized protein.	0.889
GGA1	LOC106949789	ENSPLAP00000000234	ENSPLAP00000027605	Uncharacterized protein.	Uncharacterized protein.	0.580
GGA1	LOC106950324	ENSPLAP00000000234	ENSPLAP00000009002	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.580
GGA1	LOC106950562	ENSPLAP00000000234	ENSPLAP00000019889	Uncharacterized protein.	Ras-related protein Rab-5B-like.	0.580
GGA1	LOC106951453	ENSPLAP00000000234	ENSPLAP00000014973	Uncharacterized protein.	Uncharacterized protein.	0.993
GGA1	LOC106952935	ENSPLAP00000000234	ENSPLAP00000006113	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.993
GGA1	LOC106959233	ENSPLAP00000000234	ENSPLAP00000004650	Uncharacterized protein.	Uncharacterized protein.	0.695
GGA1	LOC106961574	ENSPLAP00000000234	ENSPLAP00000028447	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.580
GGA1	gapvd1	ENSPLAP00000000234	ENSPLAP00000025269	Uncharacterized protein.	GTPase activating protein and VPS9 domains 1.	0.655