38 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b4	Splicing factor 3b, subunit 4. (362 aa)
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	sf3a3	Splicing factor 3a, subunit 3. (538 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	ENSPLAP00000004942	SEC63 domain-containing protein. (153 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (925 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	ppih	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (273 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (258 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (466 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	sf3a1	Splicing factor 3a, subunit 1. (786 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	prpf8	Pre-mRNA processing factor 8. (2323 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1069 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000002631	ENSPLAP00000004942	ENSPLAP00000002631	ENSPLAP00000004942	Uncharacterized protein.	SEC63 domain-containing protein.	0.946
ENSPLAP00000002631	ENSPLAP00000011100	ENSPLAP00000002631	ENSPLAP00000011100	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.994
ENSPLAP00000002631	SART1	ENSPLAP00000002631	ENSPLAP00000029426	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.951
ENSPLAP00000002631	ddx23	ENSPLAP00000002631	ENSPLAP00000021346	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.976
ENSPLAP00000002631	ddx42	ENSPLAP00000002631	ENSPLAP00000008025	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	0.792
ENSPLAP00000002631	ddx46	ENSPLAP00000002631	ENSPLAP00000031475	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.973
ENSPLAP00000002631	eftud2	ENSPLAP00000002631	ENSPLAP00000007888	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.987
ENSPLAP00000002631	phf5a	ENSPLAP00000002631	ENSPLAP00000000458	Uncharacterized protein.	PHD finger protein 5A.	0.976
ENSPLAP00000002631	ppih	ENSPLAP00000002631	ENSPLAP00000014024	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.935
ENSPLAP00000002631	prpf3	ENSPLAP00000002631	ENSPLAP00000028595	Uncharacterized protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.967
ENSPLAP00000002631	prpf31	ENSPLAP00000002631	ENSPLAP00000010384	Uncharacterized protein.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.965
ENSPLAP00000002631	prpf4	ENSPLAP00000002631	ENSPLAP00000008717	Uncharacterized protein.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.954
ENSPLAP00000002631	prpf6	ENSPLAP00000002631	ENSPLAP00000021853	Uncharacterized protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.975
ENSPLAP00000002631	prpf8	ENSPLAP00000002631	ENSPLAP00000029997	Uncharacterized protein.	Pre-mRNA processing factor 8.	0.979
ENSPLAP00000002631	sf3a1	ENSPLAP00000002631	ENSPLAP00000028116	Uncharacterized protein.	Splicing factor 3a, subunit 1.	0.974
ENSPLAP00000002631	sf3a2	ENSPLAP00000002631	ENSPLAP00000007648	Uncharacterized protein.	Splicing factor 3a, subunit 2.	0.975
ENSPLAP00000002631	sf3a3	ENSPLAP00000002631	ENSPLAP00000002637	Uncharacterized protein.	Splicing factor 3a, subunit 3.	0.982
ENSPLAP00000002631	sf3b1	ENSPLAP00000002631	ENSPLAP00000001221	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.976
ENSPLAP00000002631	sf3b2	ENSPLAP00000002631	ENSPLAP00000000619	Uncharacterized protein.	Splicing factor 3b, subunit 2.	0.977
ENSPLAP00000002631	sf3b3	ENSPLAP00000002631	ENSPLAP00000011218	Uncharacterized protein.	Splicing factor 3b, subunit 3.	0.974