14 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	ENSPLAP00000004942	SEC63 domain-containing protein. (153 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	ppih	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
	prpf8	Pre-mRNA processing factor 8. (2323 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004942	SART1	ENSPLAP00000004942	ENSPLAP00000029426	SEC63 domain-containing protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.974
ENSPLAP00000004942	ddx23	ENSPLAP00000004942	ENSPLAP00000021346	SEC63 domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.983
ENSPLAP00000004942	eftud2	ENSPLAP00000004942	ENSPLAP00000007888	SEC63 domain-containing protein.	Elongation factor Tu GTP binding domain containing 2.	0.989
ENSPLAP00000004942	ppih	ENSPLAP00000004942	ENSPLAP00000014024	SEC63 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.744
ENSPLAP00000004942	prpf3	ENSPLAP00000004942	ENSPLAP00000028595	SEC63 domain-containing protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.971
ENSPLAP00000004942	prpf31	ENSPLAP00000004942	ENSPLAP00000010384	SEC63 domain-containing protein.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.972
ENSPLAP00000004942	prpf4	ENSPLAP00000004942	ENSPLAP00000008717	SEC63 domain-containing protein.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.972
ENSPLAP00000004942	prpf6	ENSPLAP00000004942	ENSPLAP00000021853	SEC63 domain-containing protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.989
ENSPLAP00000004942	prpf8	ENSPLAP00000004942	ENSPLAP00000029997	SEC63 domain-containing protein.	Pre-mRNA processing factor 8.	0.997
ENSPLAP00000004942	snrnp200	ENSPLAP00000004942	ENSPLAP00000004842	SEC63 domain-containing protein.	Small nuclear ribonucleoprotein 200 (U5).	0.900
ENSPLAP00000004942	snrnp40	ENSPLAP00000004942	ENSPLAP00000022528	SEC63 domain-containing protein.	Small nuclear ribonucleoprotein 40 (U5).	0.980
ENSPLAP00000004942	snu13	ENSPLAP00000004942	ENSPLAP00000031046	SEC63 domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.971
ENSPLAP00000004942	txnl4a	ENSPLAP00000004942	ENSPLAP00000013624	SEC63 domain-containing protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.961
SART1	ENSPLAP00000004942	ENSPLAP00000029426	ENSPLAP00000004942	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	SEC63 domain-containing protein.	0.974
SART1	ddx23	ENSPLAP00000029426	ENSPLAP00000021346	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.983
SART1	eftud2	ENSPLAP00000029426	ENSPLAP00000007888	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Elongation factor Tu GTP binding domain containing 2.	0.997
SART1	ppih	ENSPLAP00000029426	ENSPLAP00000014024	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.848
SART1	prpf3	ENSPLAP00000029426	ENSPLAP00000028595	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.998
SART1	prpf31	ENSPLAP00000029426	ENSPLAP00000010384	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.998
SART1	prpf4	ENSPLAP00000029426	ENSPLAP00000008717	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.996