(5 nodes) Myosin VII, FERM domain C-lobe, repeat 2, and Equilibrioception network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ush1c	Usher syndrome 1C. (835 aa)
	LOC106949104	Usher syndrome 1Ga (autosomal recessive). (469 aa)
	anks4b	Ankyrin repeat and sterile alpha motif domain containing 4B. (430 aa)
	LOC106949596	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2165 aa)
	LOC106959425	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2141 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106949104	LOC106949596	ENSPLAP00000011197	ENSPLAP00000013526	Usher syndrome 1Ga (autosomal recessive).	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.696
LOC106949104	LOC106959425	ENSPLAP00000011197	ENSPLAP00000029719	Usher syndrome 1Ga (autosomal recessive).	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.726
LOC106949104	ush1c	ENSPLAP00000011197	ENSPLAP00000004074	Usher syndrome 1Ga (autosomal recessive).	Usher syndrome 1C.	0.947
LOC106949596	LOC106949104	ENSPLAP00000013526	ENSPLAP00000011197	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1Ga (autosomal recessive).	0.696
LOC106949596	anks4b	ENSPLAP00000013526	ENSPLAP00000012045	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.696
LOC106949596	ush1c	ENSPLAP00000013526	ENSPLAP00000004074	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1C.	0.740
LOC106959425	LOC106949104	ENSPLAP00000029719	ENSPLAP00000011197	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1Ga (autosomal recessive).	0.726
LOC106959425	anks4b	ENSPLAP00000029719	ENSPLAP00000012045	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.696
LOC106959425	ush1c	ENSPLAP00000029719	ENSPLAP00000004074	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Usher syndrome 1C.	0.798
anks4b	LOC106949596	ENSPLAP00000012045	ENSPLAP00000013526	Ankyrin repeat and sterile alpha motif domain containing 4B.	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.696
anks4b	LOC106959425	ENSPLAP00000012045	ENSPLAP00000029719	Ankyrin repeat and sterile alpha motif domain containing 4B.	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.696
anks4b	ush1c	ENSPLAP00000012045	ENSPLAP00000004074	Ankyrin repeat and sterile alpha motif domain containing 4B.	Usher syndrome 1C.	0.937
ush1c	LOC106949104	ENSPLAP00000004074	ENSPLAP00000011197	Usher syndrome 1C.	Usher syndrome 1Ga (autosomal recessive).	0.947
ush1c	LOC106949596	ENSPLAP00000004074	ENSPLAP00000013526	Usher syndrome 1C.	Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.740
ush1c	LOC106959425	ENSPLAP00000004074	ENSPLAP00000029719	Usher syndrome 1C.	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.798
ush1c	anks4b	ENSPLAP00000004074	ENSPLAP00000012045	Usher syndrome 1C.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.937