STRINGSTRING
zrsr2 zrsr2 sf3a2 sf3a2 eftud2 eftud2 rbmx rbmx snrpd2 snrpd2 txnl4b txnl4b SUGP1 SUGP1 hnrnpm hnrnpm cirbp cirbp DDX41 DDX41 dhx32 dhx32 prpf4 prpf4 lsm7 lsm7 dhx8 dhx8 SMU1 SMU1 rnpc3 rnpc3 lsm8 lsm8 zcchc8 zcchc8 syncrip syncrip prpf18 prpf18 lsm4 lsm4 ENSPLAP00000027787 ENSPLAP00000027787 DHX32 DHX32 bud31 bud31 lsm2 lsm2 sf3a1 sf3a1 ppil1 ppil1 prpf3 prpf3 sf1 sf1 ccdc12 ccdc12 LOC106939448 LOC106939448 lsm5 lsm5 ZNF830 ZNF830 rbm8a rbm8a prpf4b prpf4b cwf19l2 cwf19l2 shd shd htatsf1 htatsf1 eif4a3 eif4a3 snrpg snrpg crnkl1 crnkl1 prpf39 prpf39 ENSPLAP00000005145 ENSPLAP00000005145 ENSPLAP00000005094 ENSPLAP00000005094 ENSPLAP00000004942 ENSPLAP00000004942 snrpd1 snrpd1 snrnp200 snrnp200 rbm22 rbm22 mfap1 mfap1 tra2b tra2b LOC106953072 LOC106953072 snrpb2 snrpb2 slu7 slu7 ppwd1 ppwd1 casc3 casc3 cwc27 cwc27 cwf19l1 cwf19l1 snrpe snrpe ENSPLAP00000003478 ENSPLAP00000003478 rbm17 rbm17 sf3a3 sf3a3 ENSPLAP00000002631 ENSPLAP00000002631 ENSPLAP00000002522 ENSPLAP00000002522 ENSPLAP00000002518 ENSPLAP00000002518 LOC106953185 LOC106953185 tfip11 tfip11 LOC106946581 LOC106946581 LOC106940424 LOC106940424 snrnp25 snrnp25 snrnp48 snrnp48 sf3b1 sf3b1 LOC106958599 LOC106958599 ENSPLAP00000000084 ENSPLAP00000000084 phf5a phf5a luc7l luc7l sf3b4 sf3b4 sf3b2 sf3b2 cdc5l cdc5l gpatch1 gpatch1 yju2 yju2 sf3b5 sf3b5 dnajc17 dnajc17 hnrnpr hnrnpr luc7l3 luc7l3 ENSPLAP00000024122 ENSPLAP00000024122 ppie ppie prpf38a prpf38a smndc1 smndc1 rnf113a rnf113a LOC106941750 LOC106941750 LOC106940923 LOC106940923 ENSPLAP00000025517 ENSPLAP00000025517 LOC106948266 LOC106948266 DHX15 DHX15 ENSPLAP00000026435 ENSPLAP00000026435 wbp4 wbp4 u2af2 u2af2 ccdc130 ccdc130 snw1 snw1 TRA2B TRA2B LOC106965063 LOC106965063 LOC106942887 LOC106942887 snrpc snrpc SNIP1 SNIP1 prpf31 prpf31 ncmap ncmap ENSPLAP00000011100 ENSPLAP00000011100 dhx16 dhx16 sf3b3 sf3b3 wbp11 wbp11 wdr83 wdr83 LOC106952803 LOC106952803 LOC106960367 LOC106960367 cdc40 cdc40 txnl4a txnl4a ppih ppih prpf19 prpf19 ENSPLAP00000014291 ENSPLAP00000014291 cactin cactin zmat2 zmat2 snrpa snrpa prpf38b prpf38b pnn pnn ppp1r8 ppp1r8 ppil2 ppil2 mtrex mtrex aqr aqr cwc22 cwc22 snrpa1 snrpa1 LOC106937515 LOC106937515 adar adar LOC106940520 LOC106940520 LOC106938157 LOC106938157 rbm41 rbm41 zmat5 zmat5 pdcd7 pdcd7 plrg1 plrg1 LOC106935169 LOC106935169 MYEF2 MYEF2 ENSPLAP00000019681 ENSPLAP00000019681 LOC106942097 LOC106942097 lsm3 lsm3 lsm6 lsm6 LOC106964026 LOC106964026 LOC106954540 LOC106954540 dhx38 dhx38 cwc25 cwc25 LOC106954507 LOC106954507 zcrb1 zcrb1 ddx23 ddx23 aar2 aar2 prpf6 prpf6 snrnp70 snrnp70 ppil3 ppil3 syf2 syf2 srrm1 srrm1 bcas2 bcas2 bud13 bud13 snrnp40 snrnp40 dhx35 dhx35 ess2 ess2 LOC106960961 LOC106960961 snrpd3 snrpd3 gpkow gpkow hnrnpk hnrnpk cwc15 cwc15 snu13 snu13 xab2 xab2 usp39 usp39 dhx34 dhx34 prpf8 prpf8 ENSPLAP00000029931 ENSPLAP00000029931 sf3b6 sf3b6 gemin2 gemin2 SART1 SART1 dqx1 dqx1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (603 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
rbmxRNA binding motif protein X-linked. (383 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
SUGP1SURP and G-patch domain containing 1. (637 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (667 aa)
cirbpCold inducible RNA binding protein b. (185 aa)
DDX41DEAD-box helicase 41. (614 aa)
dhx32DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (794 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1252 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (507 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
zcchc8Zinc finger, CCHC domain containing 8. (709 aa)
syncripSynaptotagmin binding, cytoplasmic RNA interacting protein, like. (544 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
ENSPLAP00000027787RRM domain-containing protein. (271 aa)
DHX32Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (719 aa)
bud31BUD31 homolog. (171 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
sf1Splicing factor 1. (656 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
LOC106939448Zgc:153119. (295 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
ZNF830Zinc finger protein 830. (336 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
prpf4bPre-mRNA processing factor 4Bb. (967 aa)
cwf19l2CWF19 like cell cycle control factor 2. (922 aa)
shdSrc homology 2 domain containing transforming protein D, a. (416 aa)
htatsf1HIV-1 Tat specific factor 1. (459 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (769 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
ENSPLAP00000005145RRM domain-containing protein. (101 aa)
ENSPLAP00000005094Uncharacterized protein. (110 aa)
ENSPLAP00000004942SEC63 domain-containing protein. (153 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
rbm22RNA binding motif protein 22. (426 aa)
mfap1Microfibril associated protein 1. (440 aa)
tra2bTransformer 2 beta homolog. (279 aa)
LOC106953072Galectin. (373 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
slu7SLU7 homolog, splicing factor. (581 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (667 aa)
casc3Casc3 exon junction complex subunit. (767 aa)
cwc27CWC27 spliceosome associated cyclophilin. (443 aa)
cwf19l1CWF19 like cell cycle control factor 1. (532 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
ENSPLAP00000003478Uncharacterized protein. (57 aa)
rbm17RNA binding motif protein 17. (421 aa)
sf3a3Splicing factor 3a, subunit 3. (538 aa)
ENSPLAP00000002631Uncharacterized protein. (75 aa)
ENSPLAP00000002522annotation not available (237 aa)
ENSPLAP00000002518Galectin. (237 aa)
LOC106953185RRM domain-containing protein. (321 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (831 aa)
LOC106946581DEAH (Asp-Glu-Ala-His) box helicase 15. (731 aa)
LOC106940424WD_REPEATS_REGION domain-containing protein. (228 aa)
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (288 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
LOC106958599Uncharacterized protein. (228 aa)
ENSPLAP00000000084Small nuclear ribonucleoprotein polypeptide F. (85 aa)
phf5aPHD finger protein 5A. (110 aa)
luc7lLUC7-like (S. cerevisiae). (363 aa)
sf3b4Splicing factor 3b, subunit 4. (362 aa)
sf3b2Splicing factor 3b, subunit 2. (856 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (809 aa)
gpatch1G patch domain containing 1. (616 aa)
yju2YJU2 splicing factor homolog. (341 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
dnajc17DnaJ (Hsp40) homolog, subfamily C, member 17. (313 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (631 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (481 aa)
ENSPLAP00000024122DUF1716 domain-containing protein. (219 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
smndc1Survival motor neuron domain containing 1. (238 aa)
rnf113aRing finger protein 113A. (322 aa)
LOC106941750Survival of motor neuron 1, telomeric. (283 aa)
LOC106940923U2 small nuclear RNA auxiliary factor 1. (230 aa)
ENSPLAP00000025517Si:zfos-375h5.1. (173 aa)
LOC106948266Uncharacterized protein. (508 aa)
DHX15DEAH-box helicase 15. (762 aa)
ENSPLAP00000026435Uncharacterized protein. (212 aa)
wbp4Uncharacterized protein. (420 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
ccdc130Coiled-coil domain containing 130. (393 aa)
snw1SNW domain containing 1. (536 aa)
TRA2BTransformer 2 beta homolog. (292 aa)
LOC106965063RRM domain-containing protein. (306 aa)
LOC106942887DEAH (Asp-Glu-Ala-His) box polypeptide 32a. (719 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
SNIP1Smad nuclear interacting protein 1. (364 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
ncmapUncharacterized protein. (138 aa)
ENSPLAP00000011100Small nuclear ribonucleoprotein-associated protein. (230 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1053 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
wbp11WW domain binding protein 11. (696 aa)
wdr83WD repeat domain containing 83. (323 aa)
LOC106952803PRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
LOC106960367Zgc:158803. (421 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
ENSPLAP00000014291DUF1604 domain-containing protein. (97 aa)
cactinCactin. (852 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (273 aa)
prpf38bUncharacterized protein. (463 aa)
pnnPinin, desmosome associated protein. (667 aa)
ppp1r8Protein phosphatase 1, regulatory subunit 8b. (349 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
mtrexMtr4 exosome RNA helicase. (1036 aa)
aqrAquarius intron-binding spliceosomal factor. (1468 aa)
cwc22CWC22 spliceosome associated protein homolog. (1003 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (258 aa)
LOC106937515pre-mRNA-processing factor 17-like. (581 aa)
adarAdenosine deaminase RNA specific. (1361 aa)
LOC106940520Uncharacterized protein. (309 aa)
LOC106938157Zgc:103692. (293 aa)
rbm41RNA binding motif protein 41. (422 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
pdcd7Uncharacterized protein. (514 aa)
plrg1Pleiotropic regulator 1. (513 aa)
LOC106935169Myelin expression factor 2. (557 aa)
MYEF2Myelin expression factor 2. (537 aa)
ENSPLAP00000019681Serine/arginine repetitive matrix 4. (419 aa)
LOC106942097Serine/arginine repetitive matrix 1. (804 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
LOC106964026U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (451 aa)
LOC106954540Galectin. (330 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1253 aa)
cwc25CWC25 spliceosome associated protein homolog. (380 aa)
LOC106954507Heterogeneous nuclear ribonucleoprotein K, like. (420 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
aar2AAR2 splicing factor. (387 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (466 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (171 aa)
syf2SYF2 pre-mRNA-splicing factor. (289 aa)
srrm1Serine and arginine repetitive matrix 1. (804 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
bud13BUD13 homolog. (509 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
dhx35DEAH-box helicase 35. (699 aa)
ess2Ess-2 splicing factor homolog. (475 aa)
LOC106960961Si:ch211-114c17.1. (723 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
gpkowG patch domain and KOW motifs. (519 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (436 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
xab2XPA binding protein 2. (849 aa)
usp39Ubiquitin specific peptidase 39. (499 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1146 aa)
prpf8Pre-mRNA processing factor 8. (2323 aa)
ENSPLAP00000029931PRKR interacting protein 1. (176 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
dqx1DEAQ box RNA-dependent ATPase 1. (777 aa)
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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