STRINGSTRING
ENSPLAP00000000084 ENSPLAP00000000084 phf5a phf5a luc7l luc7l sf3b4 sf3b4 sf3b2 sf3b2 sf3b1 sf3b1 tfip11 tfip11 ENSPLAP00000002631 ENSPLAP00000002631 sf3a3 sf3a3 snrpe snrpe cwc27 cwc27 casc3 casc3 mfap1 mfap1 rbm22 rbm22 snrnp200 snrnp200 snrpd1 snrpd1 ENSPLAP00000004942 ENSPLAP00000004942 prpf39 prpf39 crnkl1 crnkl1 snrpg snrpg eif4a3 eif4a3 htatsf1 htatsf1 shd shd rbm8a rbm8a lsm5 lsm5 sf3a2 sf3a2 eftud2 eftud2 snrpd2 snrpd2 prpf4 prpf4 lsm7 lsm7 dhx8 dhx8 SMU1 SMU1 lsm8 lsm8 snrpc snrpc SNIP1 SNIP1 prpf31 prpf31 ENSPLAP00000011100 ENSPLAP00000011100 dhx16 dhx16 sf3b3 sf3b3 LOC106952803 LOC106952803 LOC106960367 LOC106960367 cdc40 cdc40 txnl4a txnl4a prpf19 prpf19 zmat2 zmat2 aqr aqr cwc22 cwc22 snrpa1 snrpa1 LOC106937515 LOC106937515 plrg1 plrg1 ENSPLAP00000019681 ENSPLAP00000019681 lsm3 lsm3 lsm6 lsm6 LOC106964026 LOC106964026 cwc25 cwc25 prpf6 prpf6 syf2 syf2 bcas2 bcas2 bud13 bud13 snrnp40 snrnp40 yju2 yju2 sf3b5 sf3b5 luc7l3 luc7l3 ppie ppie prpf38a prpf38a rnf113a rnf113a LOC106948266 LOC106948266 DHX15 DHX15 wbp4 wbp4 u2af2 u2af2 ccdc130 ccdc130 snw1 snw1 prpf18 prpf18 lsm4 lsm4 lsm2 lsm2 sf3a1 sf3a1 ppil1 ppil1 prpf3 prpf3 ccdc12 ccdc12 SART1 SART1 sf3b6 sf3b6 prpf8 prpf8 dhx34 dhx34 xab2 xab2 snu13 snu13 cwc15 cwc15 snrpd3 snrpd3 LOC106960961 LOC106960961
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSPLAP00000000084Small nuclear ribonucleoprotein polypeptide F. (85 aa)
phf5aPHD finger protein 5A. (110 aa)
luc7lLUC7-like (S. cerevisiae). (363 aa)
sf3b4Splicing factor 3b, subunit 4. (362 aa)
sf3b2Splicing factor 3b, subunit 2. (856 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (831 aa)
ENSPLAP00000002631Uncharacterized protein. (75 aa)
sf3a3Splicing factor 3a, subunit 3. (538 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
cwc27CWC27 spliceosome associated cyclophilin. (443 aa)
casc3Casc3 exon junction complex subunit. (767 aa)
mfap1Microfibril associated protein 1. (440 aa)
rbm22RNA binding motif protein 22. (426 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
ENSPLAP00000004942SEC63 domain-containing protein. (153 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (769 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
htatsf1HIV-1 Tat specific factor 1. (459 aa)
shdSrc homology 2 domain containing transforming protein D, a. (416 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1252 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
SNIP1Smad nuclear interacting protein 1. (364 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
ENSPLAP00000011100Small nuclear ribonucleoprotein-associated protein. (230 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1053 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
LOC106952803PRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
LOC106960367Zgc:158803. (421 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
aqrAquarius intron-binding spliceosomal factor. (1468 aa)
cwc22CWC22 spliceosome associated protein homolog. (1003 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (258 aa)
LOC106937515pre-mRNA-processing factor 17-like. (581 aa)
plrg1Pleiotropic regulator 1. (513 aa)
ENSPLAP00000019681Serine/arginine repetitive matrix 4. (419 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
LOC106964026U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (451 aa)
cwc25CWC25 spliceosome associated protein homolog. (380 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
syf2SYF2 pre-mRNA-splicing factor. (289 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
bud13BUD13 homolog. (509 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
yju2YJU2 splicing factor homolog. (341 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (481 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
rnf113aRing finger protein 113A. (322 aa)
LOC106948266Uncharacterized protein. (508 aa)
DHX15DEAH-box helicase 15. (762 aa)
wbp4Uncharacterized protein. (420 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
ccdc130Coiled-coil domain containing 130. (393 aa)
snw1SNW domain containing 1. (536 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
prpf8Pre-mRNA processing factor 8. (2323 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1146 aa)
xab2XPA binding protein 2. (849 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
LOC106960961Si:ch211-114c17.1. (723 aa)
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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