17 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	LOC106960961	Si:ch211-114c17.1. (723 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	luc7l3	LUC7-like 3 pre-mRNA splicing factor. (481 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (273 aa)
	LOC106960367	Zgc:158803. (421 aa)
	LOC106952803	PRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	luc7l	LUC7-like (S. cerevisiae). (363 aa)
	ENSPLAP00000000084	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000084	ENSPLAP00000002631	ENSPLAP00000000084	ENSPLAP00000002631	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.999
ENSPLAP00000000084	ENSPLAP00000011100	ENSPLAP00000000084	ENSPLAP00000011100	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPLAP00000000084	LOC106960367	ENSPLAP00000000084	ENSPLAP00000012620	Small nuclear ribonucleoprotein polypeptide F.	Zgc:158803.	0.921
ENSPLAP00000000084	LOC106960961	ENSPLAP00000000084	ENSPLAP00000031368	Small nuclear ribonucleoprotein polypeptide F.	Si:ch211-114c17.1.	0.840
ENSPLAP00000000084	luc7l	ENSPLAP00000000084	ENSPLAP00000000495	Small nuclear ribonucleoprotein polypeptide F.	LUC7-like (S. cerevisiae).	0.921
ENSPLAP00000000084	luc7l3	ENSPLAP00000000084	ENSPLAP00000023573	Small nuclear ribonucleoprotein polypeptide F.	LUC7-like 3 pre-mRNA splicing factor.	0.878
ENSPLAP00000000084	prpf39	ENSPLAP00000000084	ENSPLAP00000005277	Small nuclear ribonucleoprotein polypeptide F.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.843
ENSPLAP00000000084	snrpa	ENSPLAP00000000084	ENSPLAP00000015643	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptide A.	0.983
ENSPLAP00000000084	snrpb2	ENSPLAP00000000084	ENSPLAP00000003813	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptide B2.	0.983
ENSPLAP00000000084	snrpc	ENSPLAP00000000084	ENSPLAP00000009533	Small nuclear ribonucleoprotein polypeptide F.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.996
ENSPLAP00000000084	snrpd1	ENSPLAP00000000084	ENSPLAP00000004927	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSPLAP00000000084	snrpd2	ENSPLAP00000000084	ENSPLAP00000008218	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPLAP00000000084	snrpd3	ENSPLAP00000000084	ENSPLAP00000031332	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSPLAP00000000084	snrpe	ENSPLAP00000000084	ENSPLAP00000003493	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPLAP00000000084	snrpg	ENSPLAP00000000084	ENSPLAP00000005394	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
ENSPLAP00000002631	ENSPLAP00000000084	ENSPLAP00000002631	ENSPLAP00000000084	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSPLAP00000002631	ENSPLAP00000011100	ENSPLAP00000002631	ENSPLAP00000011100	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.994
ENSPLAP00000002631	LOC106960367	ENSPLAP00000002631	ENSPLAP00000012620	Uncharacterized protein.	Zgc:158803.	0.868
ENSPLAP00000002631	LOC106960961	ENSPLAP00000002631	ENSPLAP00000031368	Uncharacterized protein.	Si:ch211-114c17.1.	0.732
ENSPLAP00000002631	luc7l	ENSPLAP00000002631	ENSPLAP00000000495	Uncharacterized protein.	LUC7-like (S. cerevisiae).	0.868