19 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	sf3a3	Splicing factor 3a, subunit 3. (538 aa)
	ENSPLAP00000003478	Uncharacterized protein. (57 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	htatsf1	HIV-1 Tat specific factor 1. (459 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (258 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	sf3a1	Splicing factor 3a, subunit 1. (786 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000002631	ENSPLAP00000003478	ENSPLAP00000002631	ENSPLAP00000003478	Uncharacterized protein.	Uncharacterized protein.	0.882
ENSPLAP00000002631	ENSPLAP00000011100	ENSPLAP00000002631	ENSPLAP00000011100	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.994
ENSPLAP00000002631	htatsf1	ENSPLAP00000002631	ENSPLAP00000005593	Uncharacterized protein.	HIV-1 Tat specific factor 1.	0.629
ENSPLAP00000002631	phf5a	ENSPLAP00000002631	ENSPLAP00000000458	Uncharacterized protein.	PHD finger protein 5A.	0.976
ENSPLAP00000002631	sf3a1	ENSPLAP00000002631	ENSPLAP00000028116	Uncharacterized protein.	Splicing factor 3a, subunit 1.	0.974
ENSPLAP00000002631	sf3a2	ENSPLAP00000002631	ENSPLAP00000007648	Uncharacterized protein.	Splicing factor 3a, subunit 2.	0.975
ENSPLAP00000002631	sf3a3	ENSPLAP00000002631	ENSPLAP00000002637	Uncharacterized protein.	Splicing factor 3a, subunit 3.	0.982
ENSPLAP00000002631	sf3b1	ENSPLAP00000002631	ENSPLAP00000001221	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.976
ENSPLAP00000002631	sf3b2	ENSPLAP00000002631	ENSPLAP00000000619	Uncharacterized protein.	Splicing factor 3b, subunit 2.	0.977
ENSPLAP00000002631	sf3b3	ENSPLAP00000002631	ENSPLAP00000011218	Uncharacterized protein.	Splicing factor 3b, subunit 3.	0.974
ENSPLAP00000002631	sf3b5	ENSPLAP00000002631	ENSPLAP00000023224	Uncharacterized protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.977
ENSPLAP00000002631	sf3b6	ENSPLAP00000002631	ENSPLAP00000029870	Uncharacterized protein.	Splicing factor 3b, subunit 6.	0.954
ENSPLAP00000002631	snrpa1	ENSPLAP00000002631	ENSPLAP00000017337	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide A.	0.985
ENSPLAP00000002631	snrpd2	ENSPLAP00000002631	ENSPLAP00000008218	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPLAP00000002631	snrpd3	ENSPLAP00000002631	ENSPLAP00000031332	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSPLAP00000002631	snrpe	ENSPLAP00000002631	ENSPLAP00000003493	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPLAP00000002631	snrpg	ENSPLAP00000002631	ENSPLAP00000005394	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.999
ENSPLAP00000003478	ENSPLAP00000002631	ENSPLAP00000003478	ENSPLAP00000002631	Uncharacterized protein.	Uncharacterized protein.	0.882
ENSPLAP00000003478	ENSPLAP00000011100	ENSPLAP00000003478	ENSPLAP00000011100	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.737
ENSPLAP00000003478	phf5a	ENSPLAP00000003478	ENSPLAP00000000458	Uncharacterized protein.	PHD finger protein 5A.	0.995