23 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b4	Splicing factor 3b, subunit 4. (362 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	ENSPLAP00000000084	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	snrnp48	Small nuclear ribonucleoprotein 48 (U11/U12). (288 aa)
	snrnp25	Small nuclear ribonucleoprotein 25. (179 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	rbmx	RNA binding motif protein X-linked. (383 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (507 aa)
	rbm41	RNA binding motif protein 41. (422 aa)
	zmat5	Zinc finger, matrin-type 5. (175 aa)
	pdcd7	Uncharacterized protein. (514 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (466 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	DHX15	DEAH-box helicase 15. (762 aa)
	zrsr2	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (603 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSPLAP00000000084	ENSPLAP00000025882	ENSPLAP00000000084	DEAH-box helicase 15.	Small nuclear ribonucleoprotein polypeptide F.	0.975
DHX15	ENSPLAP00000002631	ENSPLAP00000025882	ENSPLAP00000002631	DEAH-box helicase 15.	Uncharacterized protein.	0.937
DHX15	phf5a	ENSPLAP00000025882	ENSPLAP00000000458	DEAH-box helicase 15.	PHD finger protein 5A.	0.909
DHX15	rbm41	ENSPLAP00000025882	ENSPLAP00000018190	DEAH-box helicase 15.	RNA binding motif protein 41.	0.801
DHX15	rbmx	ENSPLAP00000025882	ENSPLAP00000008003	DEAH-box helicase 15.	RNA binding motif protein X-linked.	0.417
DHX15	rnpc3	ENSPLAP00000025882	ENSPLAP00000009298	DEAH-box helicase 15.	RNA-binding region (RNP1, RRM) containing 3.	0.801
DHX15	sf3b1	ENSPLAP00000025882	ENSPLAP00000001221	DEAH-box helicase 15.	Splicing factor 3b, subunit 1.	0.952
DHX15	sf3b2	ENSPLAP00000025882	ENSPLAP00000000619	DEAH-box helicase 15.	Splicing factor 3b, subunit 2.	0.879
DHX15	sf3b4	ENSPLAP00000025882	ENSPLAP00000000565	DEAH-box helicase 15.	Splicing factor 3b, subunit 4.	0.897
DHX15	sf3b5	ENSPLAP00000025882	ENSPLAP00000023224	DEAH-box helicase 15.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.833
DHX15	sf3b6	ENSPLAP00000025882	ENSPLAP00000029870	DEAH-box helicase 15.	Splicing factor 3b, subunit 6.	0.846
DHX15	snrnp48	ENSPLAP00000025882	ENSPLAP00000001281	DEAH-box helicase 15.	Small nuclear ribonucleoprotein 48 (U11/U12).	0.659
DHX15	snrnp70	ENSPLAP00000025882	ENSPLAP00000021858	DEAH-box helicase 15.	Small nuclear ribonucleoprotein 70 (U1).	0.485
DHX15	snrpd1	ENSPLAP00000025882	ENSPLAP00000004927	DEAH-box helicase 15.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.937
DHX15	snrpd3	ENSPLAP00000025882	ENSPLAP00000031332	DEAH-box helicase 15.	Small nuclear ribonucleoprotein Sm D3.	0.971
DHX15	snrpg	ENSPLAP00000025882	ENSPLAP00000005394	DEAH-box helicase 15.	Small nuclear ribonucleoprotein G.	0.968
DHX15	zrsr2	ENSPLAP00000025882	ENSPLAP00000029549	DEAH-box helicase 15.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.422
ENSPLAP00000000084	DHX15	ENSPLAP00000000084	ENSPLAP00000025882	Small nuclear ribonucleoprotein polypeptide F.	DEAH-box helicase 15.	0.975
ENSPLAP00000000084	ENSPLAP00000002631	ENSPLAP00000000084	ENSPLAP00000002631	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.999
ENSPLAP00000000084	lsm7	ENSPLAP00000000084	ENSPLAP00000008774	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995