121 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZSWIM6	Zinc finger SWIM-type containing 6. (1130 aa)
	LOC106939714	BTB (POZ) domain containing 3a. (466 aa)
	dpcd	Deleted in primary ciliary dyskinesia homolog (mouse). (202 aa)
	bbs4	Bardet-Biedl syndrome 4. (537 aa)
	LOC106939754	Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1; Belongs to the 3-beta-HSD family. (374 aa)
	sall1	Spalt-like transcription factor 1a. (1340 aa)
	LOC106954020	Reticulon 4 receptor-like 1b. (449 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (811 aa)
	xab2	XPA binding protein 2. (849 aa)
	ENSPLAP00000030635	TSC complex subunit 1b. (456 aa)
	LOC106936768	Uncharacterized protein. (289 aa)
	numb	NUMB endocytic adaptor protein. (661 aa)
	LOC106939157	Bone morphogenetic protein 16. (477 aa)
	LOC106955388	Ubiquinol-cytochrome c reductase, complex III subunit VII. (82 aa)
	aqp1	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
	six6	SIX homeobox 6a. (245 aa)
	LOC106962838	Akirin 2. (179 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (648 aa)
	tctn1	DUF1619 domain-containing protein. (524 aa)
	LOC106951471	Amino acid transporter. (538 aa)
	LOC106950057	Neurofibromin 2b (merlin). (617 aa)
	LOC106956259	DUF1619 domain-containing protein. (614 aa)
	LOC106961621	Sad1 and UNC84 domain containing 1. (1078 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC106962429	Amino acid transporter. (675 aa)
	fez1	Fasciculation and elongation protein zeta 1 (zygin I). (402 aa)
	ccdc85c	Coiled-coil domain containing 85C. (406 aa)
	disc1	DISC1 scaffold protein. (814 aa)
	LOC106956974	Transforming, acidic coiled-coil containing protein 1. (879 aa)
	ENSPLAP00000023831	Uncharacterized protein. (84 aa)
	LOC106937241	Uncharacterized protein. (184 aa)
	efhc1	EF-hand domain (C-terminal) containing 1. (423 aa)
	ENSPLAP00000023535	Uncharacterized protein. (93 aa)
	arl13b	ADP-ribosylation factor-like 13b. (380 aa)
	dcx	Uncharacterized protein. (350 aa)
	ENSPLAP00000022419	Uncharacterized protein. (143 aa)
	bmerb1	BMERB domain containing 1. (182 aa)
	LOC106963268	Zinc finger, SWIM-type containing 6. (1119 aa)
	ENSPLAP00000020867	SIX homeobox 3a. (259 aa)
	LOC106934576	Forkhead box G1a. (346 aa)
	rpgrip1l	RPGRIP1 like. (1268 aa)
	nf2	Neurofibromin 2a (merlin). (591 aa)
	fat4	FAT atypical cadherin 4. (4943 aa)
	ENSPLAP00000019695	Reticulon 4 receptor. (470 aa)
	LOC106959978	Eomesodermin homolog a. (652 aa)
	LOC106948662	SIX homeobox 3b. (277 aa)
	bmp4	Bone morphogenetic protein 4. (401 aa)
	tbr1	T-box brain transcription factor 1b. (667 aa)
	LOC106955866	Empty spiracles homeobox 3. (246 aa)
	htr6	5-hydroxytryptamine (serotonin) receptor 6; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	ENSPLAP00000018127	Brevican. (863 aa)
	mkks	McKusick-Kaufman syndrome. (576 aa)
	btbd3	BTB (POZ) domain containing 3b. (410 aa)
	ryk	Receptor like tyrosine kinase. (634 aa)
	cntn2	Contactin 2. (1034 aa)
	LOC106937500	Reticulon 4 receptor-like 1a. (426 aa)
	cdk5r2	Cyclin-dependent kinase 5, regulatory subunit 2b (p39). (290 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (836 aa)
	srf	Serum response factor b. (601 aa)
	TRAPPC9	Trafficking protein particle complex 9. (851 aa)
	ENSPLAP00000015357	Si:dkey-1m11.5. (552 aa)
	ENSPLAP00000015342	Uncharacterized protein. (787 aa)
	RELN	Reelin. (3349 aa)
	LOC106943311	Activating transcription factor 5b. (504 aa)
	pex13	SH3 domain-containing protein. (422 aa)
	sall3	Spalt-like transcription factor 3a. (1335 aa)
	LOC106943390	Crk-like protein. (256 aa)
	LOC106946878	Cyclin-dependent kinase 5 activator. (323 aa)
	agtpbp1	ATP/GTP binding protein 1. (1235 aa)
	tsc1	Uncharacterized protein. (165 aa)
	LOC106956272	Cyclin-dependent kinase 5 activator. (334 aa)
	LOC106935491	Uncharacterized protein. (355 aa)
	LOC106945632	Akirin 2. (191 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2312 aa)
	NRGN	Neurogranin. (90 aa)
	LOC106949061	LIM homeobox 1b. (403 aa)
	nin	Ninein (GSK3B interacting protein). (1404 aa)
	slc1a2	Amino acid transporter. (558 aa)
	zswim5	Zinc finger, SWIM-type containing 5. (1159 aa)
	LOC106940909	Solute carrier family 7 member 11. (241 aa)
	ENSPLAP00000009689	Uncharacterized protein. (181 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (329 aa)
	mcph1	Microcephalin 1. (808 aa)
	LOC106935661	Neurogenin 1. (194 aa)
	LOC106945259	Si:ch73-352p4.8. (458 aa)
	LOC106958757	Uncharacterized protein. (1658 aa)
	cdk5r1	Cyclin-dependent kinase 5 activator. (302 aa)
	lef1	Lymphoid enhancer-binding factor 1. (364 aa)
	ENSPLAP00000008503	TACC_C domain-containing protein. (312 aa)
	LOC106943603	Crk-like protein. (256 aa)
	LOC106945133	Fork-head domain-containing protein. (393 aa)
	LOC106965209	NUMB like endocytic adaptor protein. (586 aa)
	LOC106940026	TSC complex subunit 1b. (907 aa)
	LOC106941703	V-crk avian sarcoma virus CT10 oncogene homolog-like. (256 aa)
	zdhhc16	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (382 aa)
	LOC106936557	Activating transcription factor 5a. (505 aa)
	hsd3b7	Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase; Belongs to the 3-beta-HSD family. (367 aa)
	tmem108	Transmembrane protein 108. (456 aa)
	ttc8	Tetratricopeptide repeat domain 8. (505 aa)
	ENSPLAP00000006006	Bardet-Biedl syndrome 1. (273 aa)
	ENSPLAP00000005991	Bardet-Biedl syndrome 1. (442 aa)
	xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
	crk	CRK proto-oncogene, adaptor protein. (306 aa)
	nars1	Asparaginyl-tRNA synthetase. (559 aa)
	mpp5	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family. (650 aa)
	gsx2	GS homeobox 2. (241 aa)
	nf1	Neurofibromin 1b. (2795 aa)
	LOC106961202	MADS-box domain-containing protein. (471 aa)
	arx	Aristaless related homeobox a. (469 aa)
	LOC106946465	SIX homeobox 7. (260 aa)
	kif14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1620 aa)
	LOC106959878	Janus kinase and microtubule interacting protein 2. (888 aa)
	sun2	SUN domain-containing protein. (590 aa)
	tacc1	TACC_C domain-containing protein. (503 aa)
	cep120	Centrosomal protein 120. (972 aa)
	LOC106959992	Forkhead box G1d. (344 aa)
	LOC106959995	Si:ch211-113g11.6; Belongs to the semaphorin family. (478 aa)
	emx2	Empty spiracles homeobox 2. (247 aa)
	MPP5	Membrane palmitoylated protein 5; Belongs to the MAGUK family. (668 aa)
	fgf16	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (190 aa)
	BAX	BCL2 associated X, apoptosis regulator. (193 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000005991	ENSPLAP00000006006	ENSPLAP00000005991	ENSPLAP00000006006	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 1.	0.953
ENSPLAP00000005991	bbs4	ENSPLAP00000005991	ENSPLAP00000031231	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 4.	0.985
ENSPLAP00000005991	mkks	ENSPLAP00000005991	ENSPLAP00000018038	Bardet-Biedl syndrome 1.	McKusick-Kaufman syndrome.	0.414
ENSPLAP00000005991	rpgrip1l	ENSPLAP00000005991	ENSPLAP00000019959	Bardet-Biedl syndrome 1.	RPGRIP1 like.	0.434
ENSPLAP00000005991	smo	ENSPLAP00000005991	ENSPLAP00000030768	Bardet-Biedl syndrome 1.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.759
ENSPLAP00000005991	ttc8	ENSPLAP00000005991	ENSPLAP00000006320	Bardet-Biedl syndrome 1.	Tetratricopeptide repeat domain 8.	0.990
ENSPLAP00000006006	ENSPLAP00000005991	ENSPLAP00000006006	ENSPLAP00000005991	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 1.	0.953
ENSPLAP00000006006	bbs4	ENSPLAP00000006006	ENSPLAP00000031231	Bardet-Biedl syndrome 1.	Bardet-Biedl syndrome 4.	0.985
ENSPLAP00000006006	mkks	ENSPLAP00000006006	ENSPLAP00000018038	Bardet-Biedl syndrome 1.	McKusick-Kaufman syndrome.	0.414
ENSPLAP00000006006	rpgrip1l	ENSPLAP00000006006	ENSPLAP00000019959	Bardet-Biedl syndrome 1.	RPGRIP1 like.	0.434
ENSPLAP00000006006	smo	ENSPLAP00000006006	ENSPLAP00000030768	Bardet-Biedl syndrome 1.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.759
ENSPLAP00000006006	ttc8	ENSPLAP00000006006	ENSPLAP00000006320	Bardet-Biedl syndrome 1.	Tetratricopeptide repeat domain 8.	0.990
ENSPLAP00000008503	LOC106956974	ENSPLAP00000008503	ENSPLAP00000024568	TACC_C domain-containing protein.	Transforming, acidic coiled-coil containing protein 1.	0.636
ENSPLAP00000008503	cep120	ENSPLAP00000008503	ENSPLAP00000002065	TACC_C domain-containing protein.	Centrosomal protein 120.	0.630
ENSPLAP00000008503	tacc1	ENSPLAP00000008503	ENSPLAP00000002207	TACC_C domain-containing protein.	TACC_C domain-containing protein.	0.636
ENSPLAP00000019695	xab2	ENSPLAP00000019695	ENSPLAP00000030711	Reticulon 4 receptor.	XPA binding protein 2.	0.456
ENSPLAP00000020867	LOC106934576	ENSPLAP00000020867	ENSPLAP00000020717	SIX homeobox 3a.	Forkhead box G1a.	0.421
ENSPLAP00000022419	RELN	ENSPLAP00000022419	ENSPLAP00000015134	Uncharacterized protein.	Reelin.	0.525
ENSPLAP00000022419	dpcd	ENSPLAP00000022419	ENSPLAP00000031567	Uncharacterized protein.	Deleted in primary ciliary dyskinesia homolog (mouse).	0.436
ENSPLAP00000023831	cdk5	ENSPLAP00000023831	ENSPLAP00000027485	Uncharacterized protein.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.946