17 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPLAP00000000351	Zinc finger RNA binding protein. (477 aa)
	LOC106964084	DZF domain-containing protein. (131 aa)
	LOC106942026	Uncharacterized protein. (191 aa)
	bmp2	Bone morphogenetic protein 2b. (409 aa)
	ENSPLAP00000005822	Metalloendopeptidase. (958 aa)
	aida	Axin interactor, dorsalization associated. (305 aa)
	LOC106960842	Ventral homeobox. (242 aa)
	ppp4c	Serine/threonine-protein phosphatase. (311 aa)
	bmp1	Metalloendopeptidase. (970 aa)
	gdf5	Growth differentiation factor 5. (486 aa)
	ift46	Uncharacterized protein. (335 aa)
	LOC106957970	Mothers against decapentaplegic homolog. (475 aa)
	max	Myc associated factor X. (160 aa)
	chrd	Chordin; Belongs to the chordin family. (933 aa)
	LOC106938520	Zinc finger RNA binding protein 2. (1027 aa)
	gdf6	Growth differentiation factor 6a. (418 aa)
	MAX	MYC associated factor X. (150 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000351	LOC106942026	ENSPLAP00000000351	ENSPLAP00000001651	Zinc finger RNA binding protein.	Uncharacterized protein.	0.936
ENSPLAP00000000351	LOC106964084	ENSPLAP00000000351	ENSPLAP00000001078	Zinc finger RNA binding protein.	DZF domain-containing protein.	0.895
ENSPLAP00000005822	bmp2	ENSPLAP00000005822	ENSPLAP00000003581	Metalloendopeptidase.	Bone morphogenetic protein 2b.	0.466
ENSPLAP00000005822	chrd	ENSPLAP00000005822	ENSPLAP00000025317	Metalloendopeptidase.	Chordin; Belongs to the chordin family.	0.903
LOC106942026	ENSPLAP00000000351	ENSPLAP00000001651	ENSPLAP00000000351	Uncharacterized protein.	Zinc finger RNA binding protein.	0.936
LOC106942026	LOC106964084	ENSPLAP00000001651	ENSPLAP00000001078	Uncharacterized protein.	DZF domain-containing protein.	0.899
LOC106957970	bmp2	ENSPLAP00000021236	ENSPLAP00000003581	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 2b.	0.734
LOC106957970	chrd	ENSPLAP00000021236	ENSPLAP00000025317	Mothers against decapentaplegic homolog.	Chordin; Belongs to the chordin family.	0.575
LOC106957970	gdf5	ENSPLAP00000021236	ENSPLAP00000018500	Mothers against decapentaplegic homolog.	Growth differentiation factor 5.	0.413
LOC106957970	gdf6	ENSPLAP00000021236	ENSPLAP00000030246	Mothers against decapentaplegic homolog.	Growth differentiation factor 6a.	0.435
LOC106964084	ENSPLAP00000000351	ENSPLAP00000001078	ENSPLAP00000000351	DZF domain-containing protein.	Zinc finger RNA binding protein.	0.895
LOC106964084	LOC106942026	ENSPLAP00000001078	ENSPLAP00000001651	DZF domain-containing protein.	Uncharacterized protein.	0.899
MAX	max	ENSPLAP00000031268	ENSPLAP00000022148	MYC associated factor X.	Myc associated factor X.	0.934
bmp1	bmp2	ENSPLAP00000018235	ENSPLAP00000003581	Metalloendopeptidase.	Bone morphogenetic protein 2b.	0.466
bmp1	chrd	ENSPLAP00000018235	ENSPLAP00000025317	Metalloendopeptidase.	Chordin; Belongs to the chordin family.	0.903
bmp2	ENSPLAP00000005822	ENSPLAP00000003581	ENSPLAP00000005822	Bone morphogenetic protein 2b.	Metalloendopeptidase.	0.466
bmp2	LOC106957970	ENSPLAP00000003581	ENSPLAP00000021236	Bone morphogenetic protein 2b.	Mothers against decapentaplegic homolog.	0.734
bmp2	bmp1	ENSPLAP00000003581	ENSPLAP00000018235	Bone morphogenetic protein 2b.	Metalloendopeptidase.	0.466
bmp2	chrd	ENSPLAP00000003581	ENSPLAP00000025317	Bone morphogenetic protein 2b.	Chordin; Belongs to the chordin family.	0.989
bmp2	gdf5	ENSPLAP00000003581	ENSPLAP00000018500	Bone morphogenetic protein 2b.	Growth differentiation factor 5.	0.625