8 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106954293	Notch receptor 1b. (2443 aa)
	mettl3	Methyltransferase like 3; Belongs to the MT-A70-like family. (587 aa)
	LOC106963330	Notch receptor 1a. (2447 aa)
	mettl14	Methyltransferase like 14; Belongs to the MT-A70-like family. (455 aa)
	LOC106962555	Meteorin like, glial cell differentiation regulator b. (293 aa)
	lef1	Lymphoid enhancer-binding factor 1. (364 aa)
	metrn	Meteorin, glial cell differentiation regulator. (302 aa)
	gpr157	G protein-coupled receptor 157. (338 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106954293	lef1	ENSPLAP00000025395	ENSPLAP00000008638	Notch receptor 1b.	Lymphoid enhancer-binding factor 1.	0.594
LOC106963330	lef1	ENSPLAP00000001986	ENSPLAP00000008638	Notch receptor 1a.	Lymphoid enhancer-binding factor 1.	0.594
lef1	LOC106954293	ENSPLAP00000008638	ENSPLAP00000025395	Lymphoid enhancer-binding factor 1.	Notch receptor 1b.	0.594
lef1	LOC106963330	ENSPLAP00000008638	ENSPLAP00000001986	Lymphoid enhancer-binding factor 1.	Notch receptor 1a.	0.594
mettl14	mettl3	ENSPLAP00000004544	ENSPLAP00000001540	Methyltransferase like 14; Belongs to the MT-A70-like family.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.999
mettl3	mettl14	ENSPLAP00000001540	ENSPLAP00000004544	Methyltransferase like 3; Belongs to the MT-A70-like family.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.999