15 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sh2b3	SH2B adaptor protein 3. (710 aa)
	ufl1	UFM1-specific ligase 1. (793 aa)
	fev	FEV transcription factor, ETS family member. (264 aa)
	srf	Serum response factor b. (601 aa)
	ENSPLAP00000015949	Mindbomb E3 ubiquitin protein ligase 1. (1039 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	LOC106963330	Notch receptor 1a. (2447 aa)
	LOC106961202	MADS-box domain-containing protein. (471 aa)
	meox1	Mesenchyme homeobox 1. (265 aa)
	ENSPLAP00000022901	BHLH domain-containing protein. (113 aa)
	LOC106954293	Notch receptor 1b. (2443 aa)
	batf	Basic leucine zipper transcription factor, ATF-like. (124 aa)
	LOC106939821	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1100 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (722 aa)
	LOC106948963	T-cell acute lymphocytic leukemia 1. (396 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106961202	fev	ENSPLAP00000003643	ENSPLAP00000017223	MADS-box domain-containing protein.	FEV transcription factor, ETS family member.	0.609
LOC106961202	srf	ENSPLAP00000003643	ENSPLAP00000016462	MADS-box domain-containing protein.	Serum response factor b.	0.905
ercc2	xrcc5	ENSPLAP00000020036	ENSPLAP00000030463	Excision repair cross-complementation group 2.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.565
fev	LOC106961202	ENSPLAP00000017223	ENSPLAP00000003643	FEV transcription factor, ETS family member.	MADS-box domain-containing protein.	0.609
fev	srf	ENSPLAP00000017223	ENSPLAP00000016462	FEV transcription factor, ETS family member.	Serum response factor b.	0.609
srf	LOC106961202	ENSPLAP00000016462	ENSPLAP00000003643	Serum response factor b.	MADS-box domain-containing protein.	0.905
srf	fev	ENSPLAP00000016462	ENSPLAP00000017223	Serum response factor b.	FEV transcription factor, ETS family member.	0.609
xrcc5	ercc2	ENSPLAP00000030463	ENSPLAP00000020036	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	Excision repair cross-complementation group 2.	0.565