47 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	ENSPLAP00000000084	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b4	Splicing factor 3b, subunit 4. (362 aa)
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	sf3a3	Splicing factor 3a, subunit 3. (538 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (443 aa)
	mfap1	Microfibril associated protein 1. (440 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	ENSPLAP00000004942	SEC63 domain-containing protein. (153 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	SNIP1	Smad nuclear interacting protein 1. (364 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1053 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1003 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (258 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	bud13	BUD13 homolog. (509 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	prpf38a	Pre-mRNA processing factor 38A. (309 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	LOC106948266	Uncharacterized protein. (508 aa)
	wbp4	Uncharacterized protein. (420 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	sf3a1	Splicing factor 3a, subunit 1. (786 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
	prpf8	Pre-mRNA processing factor 8. (2323 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000084	ENSPLAP00000002631	ENSPLAP00000000084	ENSPLAP00000002631	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.999
ENSPLAP00000000084	ENSPLAP00000004942	ENSPLAP00000000084	ENSPLAP00000004942	Small nuclear ribonucleoprotein polypeptide F.	SEC63 domain-containing protein.	0.983
ENSPLAP00000000084	ENSPLAP00000011100	ENSPLAP00000000084	ENSPLAP00000011100	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPLAP00000000084	LOC106948266	ENSPLAP00000000084	ENSPLAP00000025651	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.788
ENSPLAP00000000084	SART1	ENSPLAP00000000084	ENSPLAP00000029426	Small nuclear ribonucleoprotein polypeptide F.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.993
ENSPLAP00000000084	SMU1	ENSPLAP00000000084	ENSPLAP00000008932	Small nuclear ribonucleoprotein polypeptide F.	SMU1 DNA replication regulator and spliceosomal factor.	0.866
ENSPLAP00000000084	SNIP1	ENSPLAP00000000084	ENSPLAP00000009667	Small nuclear ribonucleoprotein polypeptide F.	Smad nuclear interacting protein 1.	0.934
ENSPLAP00000000084	bud13	ENSPLAP00000000084	ENSPLAP00000022492	Small nuclear ribonucleoprotein polypeptide F.	BUD13 homolog.	0.933
ENSPLAP00000000084	cwc22	ENSPLAP00000000084	ENSPLAP00000017054	Small nuclear ribonucleoprotein polypeptide F.	CWC22 spliceosome associated protein homolog.	0.935
ENSPLAP00000000084	cwc27	ENSPLAP00000000084	ENSPLAP00000003722	Small nuclear ribonucleoprotein polypeptide F.	CWC27 spliceosome associated cyclophilin.	0.956
ENSPLAP00000000084	dhx16	ENSPLAP00000000084	ENSPLAP00000011207	Small nuclear ribonucleoprotein polypeptide F.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.964
ENSPLAP00000000084	eftud2	ENSPLAP00000000084	ENSPLAP00000007888	Small nuclear ribonucleoprotein polypeptide F.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSPLAP00000000084	lsm2	ENSPLAP00000000084	ENSPLAP00000028079	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
ENSPLAP00000000084	lsm3	ENSPLAP00000000084	ENSPLAP00000019977	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSPLAP00000000084	lsm4	ENSPLAP00000000084	ENSPLAP00000027560	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.988
ENSPLAP00000000084	lsm5	ENSPLAP00000000084	ENSPLAP00000007344	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
ENSPLAP00000000084	lsm6	ENSPLAP00000000084	ENSPLAP00000020350	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.986
ENSPLAP00000000084	lsm7	ENSPLAP00000000084	ENSPLAP00000008774	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSPLAP00000000084	lsm8	ENSPLAP00000000084	ENSPLAP00000009513	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.992
ENSPLAP00000000084	mfap1	ENSPLAP00000000084	ENSPLAP00000004354	Small nuclear ribonucleoprotein polypeptide F.	Microfibril associated protein 1.	0.818