(14 nodes) RNA decapping network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DXO	Decapping exoribonuclease. (421 aa)
	patl1	PAT1 homolog 1, processing body mRNA decay factor. (797 aa)
	dcps	Decapping enzyme, scavenger. (330 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	dcp1a	Decapping mRNA 1A. (553 aa)
	dcp1b	Decapping mRNA 1B. (653 aa)
	dcp2	Decapping mRNA 2. (370 aa)
	noct	Nocturnin. (372 aa)
	patl2	PAT1 homolog 2. (704 aa)
	LOC106946193	Endo/exonuclease/phosphatase domain-containing protein. (385 aa)
	edc3	Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
	nudt12	Nudix (nucleoside diphosphate linked moiety X)-type motif 12. (460 aa)
	nudt3	Nudix (nucleoside diphosphate linked moiety X)-type motif 3b. (178 aa)
	edc4	Enhancer of mRNA decapping 4. (1244 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DXO	dcp2	ENSPLAP00000012020	ENSPLAP00000021241	Decapping exoribonuclease.	Decapping mRNA 2.	0.555
DXO	nudt3	ENSPLAP00000012020	ENSPLAP00000009596	Decapping exoribonuclease.	Nudix (nucleoside diphosphate linked moiety X)-type motif 3b.	0.503
LOC106946193	edc3	ENSPLAP00000027553	ENSPLAP00000026548	Endo/exonuclease/phosphatase domain-containing protein.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.471
LOC106946193	lsm1	ENSPLAP00000027553	ENSPLAP00000005861	Endo/exonuclease/phosphatase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.429
LOC106946193	patl1	ENSPLAP00000027553	ENSPLAP00000014713	Endo/exonuclease/phosphatase domain-containing protein.	PAT1 homolog 1, processing body mRNA decay factor.	0.672
LOC106946193	patl2	ENSPLAP00000027553	ENSPLAP00000016548	Endo/exonuclease/phosphatase domain-containing protein.	PAT1 homolog 2.	0.672
dcp1a	dcp1b	ENSPLAP00000007154	ENSPLAP00000021833	Decapping mRNA 1A.	Decapping mRNA 1B.	0.989
dcp1a	dcp2	ENSPLAP00000007154	ENSPLAP00000021241	Decapping mRNA 1A.	Decapping mRNA 2.	0.989
dcp1a	dcps	ENSPLAP00000007154	ENSPLAP00000003479	Decapping mRNA 1A.	Decapping enzyme, scavenger.	0.459
dcp1a	edc3	ENSPLAP00000007154	ENSPLAP00000026548	Decapping mRNA 1A.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.989
dcp1a	edc4	ENSPLAP00000007154	ENSPLAP00000011971	Decapping mRNA 1A.	Enhancer of mRNA decapping 4.	0.986
dcp1a	lsm1	ENSPLAP00000007154	ENSPLAP00000005861	Decapping mRNA 1A.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.874
dcp1a	nudt3	ENSPLAP00000007154	ENSPLAP00000009596	Decapping mRNA 1A.	Nudix (nucleoside diphosphate linked moiety X)-type motif 3b.	0.845
dcp1a	patl1	ENSPLAP00000007154	ENSPLAP00000014713	Decapping mRNA 1A.	PAT1 homolog 1, processing body mRNA decay factor.	0.965
dcp1a	patl2	ENSPLAP00000007154	ENSPLAP00000016548	Decapping mRNA 1A.	PAT1 homolog 2.	0.965
dcp1b	dcp1a	ENSPLAP00000021833	ENSPLAP00000007154	Decapping mRNA 1B.	Decapping mRNA 1A.	0.989
dcp1b	dcp2	ENSPLAP00000021833	ENSPLAP00000021241	Decapping mRNA 1B.	Decapping mRNA 2.	0.987
dcp1b	dcps	ENSPLAP00000021833	ENSPLAP00000003479	Decapping mRNA 1B.	Decapping enzyme, scavenger.	0.547
dcp1b	edc3	ENSPLAP00000021833	ENSPLAP00000026548	Decapping mRNA 1B.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.991
dcp1b	edc4	ENSPLAP00000021833	ENSPLAP00000011971	Decapping mRNA 1B.	Enhancer of mRNA decapping 4.	0.987