20 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPLAP00000016289	Uncharacterized protein. (91 aa)
	prdm14	PR domain containing 14. (585 aa)
	LOC106961333	4F5 domain-containing protein. (76 aa)
	wdr43	WD repeat domain 43. (650 aa)
	cnot2	CCR4-NOT transcription complex, subunit 2. (517 aa)
	LOC106946362	NOT2_3_5 domain-containing protein. (520 aa)
	ENSPLAP00000005760	Lysyl oxidase-like 4. (265 aa)
	LOC106947771	ELAV-like protein; Belongs to the RRM elav family. (348 aa)
	LOC106945215	Pleiotrophin. (161 aa)
	zc3h13	Zinc finger CCCH-type containing 13. (1800 aa)
	sav1	Salvador family WW domain containing protein 1. (396 aa)
	bcl7a	BAF chromatin remodeling complex subunit BCL7A. (199 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
	LOC106955726	Zgc:91910. (76 aa)
	znf706	4F5 domain-containing protein. (76 aa)
	LOC106939472	Si:cabz01100188.1. (912 aa)
	cnot3	CCR4-NOT transcription complex, subunit 3a. (899 aa)
	LOC106945030	CCR4-NOT transcription complex, subunit 3b. (905 aa)
	ELAVL1	ELAV-like protein; Belongs to the RRM elav family. (319 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (811 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106945030	LOC106946362	ENSPLAP00000025990	ENSPLAP00000005665	CCR4-NOT transcription complex, subunit 3b.	NOT2_3_5 domain-containing protein.	0.975
LOC106945030	cnot2	ENSPLAP00000025990	ENSPLAP00000004377	CCR4-NOT transcription complex, subunit 3b.	CCR4-NOT transcription complex, subunit 2.	0.975
LOC106945030	cnot3	ENSPLAP00000025990	ENSPLAP00000025943	CCR4-NOT transcription complex, subunit 3b.	CCR4-NOT transcription complex, subunit 3a.	0.973
LOC106946362	LOC106945030	ENSPLAP00000005665	ENSPLAP00000025990	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex, subunit 3b.	0.975
LOC106946362	cnot2	ENSPLAP00000005665	ENSPLAP00000004377	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex, subunit 2.	0.936
LOC106946362	cnot3	ENSPLAP00000005665	ENSPLAP00000025943	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex, subunit 3a.	0.975
cnot2	LOC106945030	ENSPLAP00000004377	ENSPLAP00000025990	CCR4-NOT transcription complex, subunit 2.	CCR4-NOT transcription complex, subunit 3b.	0.975
cnot2	LOC106946362	ENSPLAP00000004377	ENSPLAP00000005665	CCR4-NOT transcription complex, subunit 2.	NOT2_3_5 domain-containing protein.	0.936
cnot2	cnot3	ENSPLAP00000004377	ENSPLAP00000025943	CCR4-NOT transcription complex, subunit 2.	CCR4-NOT transcription complex, subunit 3a.	0.975
cnot3	LOC106945030	ENSPLAP00000025943	ENSPLAP00000025990	CCR4-NOT transcription complex, subunit 3a.	CCR4-NOT transcription complex, subunit 3b.	0.973
cnot3	LOC106946362	ENSPLAP00000025943	ENSPLAP00000005665	CCR4-NOT transcription complex, subunit 3a.	NOT2_3_5 domain-containing protein.	0.975
cnot3	cnot2	ENSPLAP00000025943	ENSPLAP00000004377	CCR4-NOT transcription complex, subunit 3a.	CCR4-NOT transcription complex, subunit 2.	0.975