7 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arl6ip1	ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
	rps15a	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	sec61b	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (97 aa)
	LOC106953257	Plug_translocon domain-containing protein. (476 aa)
	LOC106958417	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (458 aa)
	ssr4	Signal sequence receptor, delta. (167 aa)
	LOC106958414	Plug_translocon domain-containing protein. (476 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106953257	LOC106958414	ENSPLAP00000020068	ENSPLAP00000019167	Plug_translocon domain-containing protein.	Plug_translocon domain-containing protein.	0.898
LOC106953257	arl6ip1	ENSPLAP00000020068	ENSPLAP00000016746	Plug_translocon domain-containing protein.	ADP-ribosylation factor-like 6 interacting protein 1.	0.968
LOC106953257	rps15a	ENSPLAP00000020068	ENSPLAP00000022637	Plug_translocon domain-containing protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.968
LOC106953257	sec61b	ENSPLAP00000020068	ENSPLAP00000024127	Plug_translocon domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.994
LOC106953257	ssr4	ENSPLAP00000020068	ENSPLAP00000007646	Plug_translocon domain-containing protein.	Signal sequence receptor, delta.	0.795
LOC106958414	LOC106953257	ENSPLAP00000019167	ENSPLAP00000020068	Plug_translocon domain-containing protein.	Plug_translocon domain-containing protein.	0.898
LOC106958414	arl6ip1	ENSPLAP00000019167	ENSPLAP00000016746	Plug_translocon domain-containing protein.	ADP-ribosylation factor-like 6 interacting protein 1.	0.968
LOC106958414	rps15a	ENSPLAP00000019167	ENSPLAP00000022637	Plug_translocon domain-containing protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.968
LOC106958414	sec61b	ENSPLAP00000019167	ENSPLAP00000024127	Plug_translocon domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.994
LOC106958414	ssr4	ENSPLAP00000019167	ENSPLAP00000007646	Plug_translocon domain-containing protein.	Signal sequence receptor, delta.	0.795
LOC106958417	arl6ip1	ENSPLAP00000000228	ENSPLAP00000016746	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	ADP-ribosylation factor-like 6 interacting protein 1.	0.968
LOC106958417	rps15a	ENSPLAP00000000228	ENSPLAP00000022637	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.968
LOC106958417	sec61b	ENSPLAP00000000228	ENSPLAP00000024127	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.979
LOC106958417	ssr4	ENSPLAP00000000228	ENSPLAP00000007646	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	Signal sequence receptor, delta.	0.795
arl6ip1	LOC106953257	ENSPLAP00000016746	ENSPLAP00000020068	ADP-ribosylation factor-like 6 interacting protein 1.	Plug_translocon domain-containing protein.	0.968
arl6ip1	LOC106958414	ENSPLAP00000016746	ENSPLAP00000019167	ADP-ribosylation factor-like 6 interacting protein 1.	Plug_translocon domain-containing protein.	0.968
arl6ip1	LOC106958417	ENSPLAP00000016746	ENSPLAP00000000228	ADP-ribosylation factor-like 6 interacting protein 1.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.968
arl6ip1	rps15a	ENSPLAP00000016746	ENSPLAP00000022637	ADP-ribosylation factor-like 6 interacting protein 1.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.638
arl6ip1	sec61b	ENSPLAP00000016746	ENSPLAP00000024127	ADP-ribosylation factor-like 6 interacting protein 1.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.832
rps15a	LOC106953257	ENSPLAP00000022637	ENSPLAP00000020068	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	Plug_translocon domain-containing protein.	0.968