(60 nodes) Cytosolic ribosome network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106954823	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (307 aa)
	LOC106939900	40S ribosomal protein S27. (84 aa)
	LOC106948676	40S ribosomal protein S27-like. (84 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	LOC106950964	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (182 aa)
	RPS29	Ribosomal protein S29. (71 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
	LOC106947168	Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	ENSPLAP00000023604	Ribosomal protein S28. (60 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (248 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (167 aa)
	LOC106937427	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	LOC106949972	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (132 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	rpl9	Ribosomal protein L9. (192 aa)
	ENSPLAP00000017610	Uncharacterized protein. (99 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	dhx29	DEAH (Asp-Glu-Ala-His) box polypeptide 29. (986 aa)
	rpl24	Ribosomal protein L24. (157 aa)
	mcts1	Malignant T-cell-amplified sequence. (182 aa)
	RPL30	Ribosomal_L7Ae domain-containing protein. (121 aa)
	rpl6	Ribosomal protein L6. (271 aa)
	LOC106953469	Ribosomal protein L26. (145 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl31	Ribosomal protein L31. (134 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (172 aa)
	RPS19	Ribosomal protein S19. (149 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	ENSPLAP00000008510	Ribosomal_L7Ae domain-containing protein. (74 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	LOC106960640	Ribosomal protein S17. (130 aa)
	LOC106942871	Ribosomal protein S19. (147 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	LOC106940296	Uncharacterized protein. (134 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	rpl34	Ribosomal protein L34. (117 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (149 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	ENSPLAP00000030343	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	ENSPLAP00000027452	Uncharacterized protein. (53 aa)
	LOC106942607	40S ribosomal protein SA. (307 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	rps3a	Ribosomal protein S3A. (266 aa)
	rpl4	Ribosomal protein L4. (368 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000008510	ENSPLAP00000017610	ENSPLAP00000008510	ENSPLAP00000017610	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.985
ENSPLAP00000008510	ENSPLAP00000023604	ENSPLAP00000008510	ENSPLAP00000023604	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S28.	0.996
ENSPLAP00000008510	ENSPLAP00000027452	ENSPLAP00000008510	ENSPLAP00000027452	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.980
ENSPLAP00000008510	ENSPLAP00000030343	ENSPLAP00000008510	ENSPLAP00000030343	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.993
ENSPLAP00000008510	LOC106937427	ENSPLAP00000008510	ENSPLAP00000020965	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.980
ENSPLAP00000008510	LOC106939900	ENSPLAP00000008510	ENSPLAP00000025951	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S27.	0.929
ENSPLAP00000008510	LOC106940296	ENSPLAP00000008510	ENSPLAP00000003204	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.995
ENSPLAP00000008510	LOC106942607	ENSPLAP00000008510	ENSPLAP00000027381	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein SA.	0.984
ENSPLAP00000008510	LOC106942871	ENSPLAP00000008510	ENSPLAP00000005637	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S19.	0.985
ENSPLAP00000008510	LOC106948676	ENSPLAP00000008510	ENSPLAP00000031530	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S27-like.	0.929
ENSPLAP00000008510	LOC106949972	ENSPLAP00000008510	ENSPLAP00000020839	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.	0.998
ENSPLAP00000008510	LOC106953469	ENSPLAP00000008510	ENSPLAP00000013727	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L26.	0.998
ENSPLAP00000008510	LOC106954823	ENSPLAP00000008510	ENSPLAP00000026271	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.984
ENSPLAP00000008510	LOC106960640	ENSPLAP00000008510	ENSPLAP00000006712	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S17.	0.979
ENSPLAP00000008510	RPL19	ENSPLAP00000008510	ENSPLAP00000001388	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.994
ENSPLAP00000008510	RPL19-2	ENSPLAP00000008510	ENSPLAP00000013115	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.994
ENSPLAP00000008510	RPL27A	ENSPLAP00000008510	ENSPLAP00000008831	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.998
ENSPLAP00000008510	RPL7A	ENSPLAP00000008510	ENSPLAP00000017521	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein L7a.	0.998
ENSPLAP00000008510	RPS19	ENSPLAP00000008510	ENSPLAP00000008847	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S19.	0.985
ENSPLAP00000008510	RPS20	ENSPLAP00000008510	ENSPLAP00000031006	Ribosomal_L7Ae domain-containing protein.	Ribosomal protein S20.	0.996