28 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106956261	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (990 aa)
	asphd2	Aspartate beta-hydroxylase domain containing 2. (409 aa)
	LOC106957433	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1014 aa)
	LOC106959359	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (459 aa)
	RNF121	Ring finger protein 121. (332 aa)
	LOC106940416	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1042 aa)
	LOC106947909	Un-named hu7910. (679 aa)
	rnf175	Ring finger protein 175. (313 aa)
	pln	Si:ch211-270g19.5. (129 aa)
	ENSPLAP00000004892	Uncharacterized protein. (1046 aa)
	ENSPLAP00000005242	Asp-B-Hydro_N domain-containing protein. (96 aa)
	srl	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (461 aa)
	LOC106947184	Peptidylprolyl isomerase. (107 aa)
	LOC106934571	Ryanodine receptor 2b (cardiac). (4761 aa)
	ENSPLAP00000008247	Asp-B-Hydro_N domain-containing protein. (135 aa)
	ENSPLAP00000009410	Ins145_P3_rec domain-containing protein. (136 aa)
	LOC106963777	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1063 aa)
	asphd1	Aspartate beta-hydroxylase domain containing 1. (357 aa)
	atp2a3	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1021 aa)
	atp2a2	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1035 aa)
	LOC106960988	Uncharacterized protein. (3750 aa)
	ENSPLAP00000023040	Uncharacterized protein. (1021 aa)
	SRL	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (765 aa)
	LOC106950533	Calcium homeostasis endoplasmic reticulum protein. (368 aa)
	LOC106947412	Ryanodine receptor 1b (skeletal). (3777 aa)
	RYR3	Ryanodine receptor 3. (2987 aa)
	ENSPLAP00000021962	Uncharacterized protein. (1031 aa)
	LOC106957123	A kinase (PRKA) anchor protein 6. (2225 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004892	ENSPLAP00000008247	ENSPLAP00000004892	ENSPLAP00000008247	Uncharacterized protein.	Asp-B-Hydro_N domain-containing protein.	0.846
ENSPLAP00000004892	LOC106947184	ENSPLAP00000004892	ENSPLAP00000007428	Uncharacterized protein.	Peptidylprolyl isomerase.	0.741
ENSPLAP00000004892	LOC106947909	ENSPLAP00000004892	ENSPLAP00000003452	Uncharacterized protein.	Un-named hu7910.	0.885
ENSPLAP00000004892	LOC106957123	ENSPLAP00000004892	ENSPLAP00000022281	Uncharacterized protein.	A kinase (PRKA) anchor protein 6.	0.429
ENSPLAP00000004892	LOC106959359	ENSPLAP00000004892	ENSPLAP00000030618	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.571
ENSPLAP00000004892	LOC106960988	ENSPLAP00000004892	ENSPLAP00000025088	Uncharacterized protein.	Uncharacterized protein.	0.839
ENSPLAP00000004892	RYR3	ENSPLAP00000004892	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.939
ENSPLAP00000004892	asphd1	ENSPLAP00000004892	ENSPLAP00000010882	Uncharacterized protein.	Aspartate beta-hydroxylase domain containing 1.	0.486
ENSPLAP00000004892	asphd2	ENSPLAP00000004892	ENSPLAP00000026159	Uncharacterized protein.	Aspartate beta-hydroxylase domain containing 2.	0.486
ENSPLAP00000008247	ENSPLAP00000004892	ENSPLAP00000008247	ENSPLAP00000004892	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.846
ENSPLAP00000008247	ENSPLAP00000009410	ENSPLAP00000008247	ENSPLAP00000009410	Asp-B-Hydro_N domain-containing protein.	Ins145_P3_rec domain-containing protein.	0.713
ENSPLAP00000008247	ENSPLAP00000021962	ENSPLAP00000008247	ENSPLAP00000021962	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.846
ENSPLAP00000008247	ENSPLAP00000023040	ENSPLAP00000008247	ENSPLAP00000023040	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.822
ENSPLAP00000008247	LOC106934571	ENSPLAP00000008247	ENSPLAP00000007519	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 2b (cardiac).	0.824
ENSPLAP00000008247	LOC106947412	ENSPLAP00000008247	ENSPLAP00000020960	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 1b (skeletal).	0.822
ENSPLAP00000008247	LOC106960988	ENSPLAP00000008247	ENSPLAP00000025088	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.713
ENSPLAP00000008247	RYR3	ENSPLAP00000008247	ENSPLAP00000021172	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 3.	0.846
ENSPLAP00000009410	ENSPLAP00000008247	ENSPLAP00000009410	ENSPLAP00000008247	Ins145_P3_rec domain-containing protein.	Asp-B-Hydro_N domain-containing protein.	0.713
ENSPLAP00000009410	LOC106934571	ENSPLAP00000009410	ENSPLAP00000007519	Ins145_P3_rec domain-containing protein.	Ryanodine receptor 2b (cardiac).	0.853
ENSPLAP00000009410	LOC106947184	ENSPLAP00000009410	ENSPLAP00000007428	Ins145_P3_rec domain-containing protein.	Peptidylprolyl isomerase.	0.741