16 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRL	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (765 aa)
	LOC106941581	Calsequestrin-1-like. (493 aa)
	LOC106954917	Calumenin b. (315 aa)
	rcn1	Reticulocalbin 1, EF-hand calcium binding domain. (325 aa)
	casq1	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (469 aa)
	manf	Mesencephalic astrocyte-derived neurotrophic factor. (178 aa)
	LOC106942272	Uncharacterized protein. (284 aa)
	LOC106934768	Uncharacterized protein. (482 aa)
	LOC106935502	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (444 aa)
	rcn3	Reticulocalbin 3, EF-hand calcium binding domain. (313 aa)
	LOC106947247	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (424 aa)
	srl	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (461 aa)
	LOC106963024	DnaJ (Hsp40) homolog, subfamily C, member 16. (788 aa)
	LOC106955123	DnaJ (Hsp40) homolog, subfamily C, member 16 like. (792 aa)
	LOC106941889	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (493 aa)
	hsp90b1	Heat shock protein 90, beta (grp94), member 1. (794 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106935502	LOC106941581	ENSPLAP00000012642	ENSPLAP00000028182	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin-1-like.	0.850
LOC106935502	LOC106941889	ENSPLAP00000012642	ENSPLAP00000003082	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.850
LOC106935502	LOC106947247	ENSPLAP00000012642	ENSPLAP00000006009	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.909
LOC106935502	casq1	ENSPLAP00000012642	ENSPLAP00000022283	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.651
LOC106941581	LOC106935502	ENSPLAP00000028182	ENSPLAP00000012642	Calsequestrin-1-like.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.850
LOC106941581	LOC106947247	ENSPLAP00000028182	ENSPLAP00000006009	Calsequestrin-1-like.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.669
LOC106941581	casq1	ENSPLAP00000028182	ENSPLAP00000022283	Calsequestrin-1-like.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.669
LOC106941889	LOC106935502	ENSPLAP00000003082	ENSPLAP00000012642	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.850
LOC106941889	LOC106947247	ENSPLAP00000003082	ENSPLAP00000006009	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.669
LOC106941889	casq1	ENSPLAP00000003082	ENSPLAP00000022283	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.669
LOC106942272	hsp90b1	ENSPLAP00000017091	ENSPLAP00000001987	Uncharacterized protein.	Heat shock protein 90, beta (grp94), member 1.	0.510
LOC106947247	LOC106935502	ENSPLAP00000006009	ENSPLAP00000012642	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.909
LOC106947247	LOC106941581	ENSPLAP00000006009	ENSPLAP00000028182	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin-1-like.	0.669
LOC106947247	LOC106941889	ENSPLAP00000006009	ENSPLAP00000003082	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.669
LOC106947247	casq1	ENSPLAP00000006009	ENSPLAP00000022283	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.649
LOC106954917	hsp90b1	ENSPLAP00000025241	ENSPLAP00000001987	Calumenin b.	Heat shock protein 90, beta (grp94), member 1.	0.510
LOC106955123	hsp90b1	ENSPLAP00000003822	ENSPLAP00000001987	DnaJ (Hsp40) homolog, subfamily C, member 16 like.	Heat shock protein 90, beta (grp94), member 1.	0.626
LOC106963024	hsp90b1	ENSPLAP00000005935	ENSPLAP00000001987	DnaJ (Hsp40) homolog, subfamily C, member 16.	Heat shock protein 90, beta (grp94), member 1.	0.626
casq1	LOC106935502	ENSPLAP00000022283	ENSPLAP00000012642	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	0.651
casq1	LOC106941581	ENSPLAP00000022283	ENSPLAP00000028182	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.	Calsequestrin-1-like.	0.669