43 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPLAP00000004942	SEC63 domain-containing protein. (153 aa)
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	ENSPLAP00000003015	Ig-like domain-containing protein. (206 aa)
	ENSPLAP00000003478	Uncharacterized protein. (57 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	htatsf1	HIV-1 Tat specific factor 1. (459 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (379 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	trmt13	tRNA methyltransferase 13 homolog. (445 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (507 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	ppih	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (273 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (258 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	ENSPLAP00000021015	Ig-like domain-containing protein. (198 aa)
	kiaa2026	Bromo domain-containing protein. (2240 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	inpp5d	Inositol polyphosphate-5-phosphatase D. (1017 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
	LOC106939448	Zgc:153119. (295 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
	prpf8	Pre-mRNA processing factor 8. (2323 aa)
	usp39	Ubiquitin specific peptidase 39. (499 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000002631	ENSPLAP00000003015	ENSPLAP00000002631	ENSPLAP00000003015	Uncharacterized protein.	Ig-like domain-containing protein.	0.892
ENSPLAP00000002631	ENSPLAP00000003478	ENSPLAP00000002631	ENSPLAP00000003478	Uncharacterized protein.	Uncharacterized protein.	0.882
ENSPLAP00000002631	ENSPLAP00000004942	ENSPLAP00000002631	ENSPLAP00000004942	Uncharacterized protein.	SEC63 domain-containing protein.	0.946
ENSPLAP00000002631	ENSPLAP00000011100	ENSPLAP00000002631	ENSPLAP00000011100	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.994
ENSPLAP00000002631	ENSPLAP00000021015	ENSPLAP00000002631	ENSPLAP00000021015	Uncharacterized protein.	Ig-like domain-containing protein.	0.892
ENSPLAP00000002631	LOC106939448	ENSPLAP00000002631	ENSPLAP00000029403	Uncharacterized protein.	Zgc:153119.	0.955
ENSPLAP00000002631	SART1	ENSPLAP00000002631	ENSPLAP00000029426	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.951
ENSPLAP00000002631	cd2bp2	ENSPLAP00000002631	ENSPLAP00000007093	Uncharacterized protein.	CD2 (cytoplasmic tail) binding protein 2.	0.676
ENSPLAP00000002631	ddx23	ENSPLAP00000002631	ENSPLAP00000021346	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.976
ENSPLAP00000002631	htatsf1	ENSPLAP00000002631	ENSPLAP00000005593	Uncharacterized protein.	HIV-1 Tat specific factor 1.	0.629
ENSPLAP00000002631	lsm2	ENSPLAP00000002631	ENSPLAP00000028079	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
ENSPLAP00000002631	lsm3	ENSPLAP00000002631	ENSPLAP00000019977	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.976
ENSPLAP00000002631	lsm4	ENSPLAP00000002631	ENSPLAP00000027560	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.973
ENSPLAP00000002631	lsm5	ENSPLAP00000002631	ENSPLAP00000007344	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.970
ENSPLAP00000002631	lsm6	ENSPLAP00000002631	ENSPLAP00000020350	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.973
ENSPLAP00000002631	lsm7	ENSPLAP00000002631	ENSPLAP00000008774	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.977
ENSPLAP00000002631	lsm8	ENSPLAP00000002631	ENSPLAP00000009513	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.975
ENSPLAP00000002631	ppih	ENSPLAP00000002631	ENSPLAP00000014024	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.935
ENSPLAP00000002631	prpf18	ENSPLAP00000002631	ENSPLAP00000027490	Uncharacterized protein.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.730
ENSPLAP00000002631	prpf3	ENSPLAP00000002631	ENSPLAP00000028595	Uncharacterized protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.967