15 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CASP3	Caspase 3; Belongs to the peptidase C14A family. (294 aa)
	casp2	Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (470 aa)
	casp9	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (427 aa)
	LOC106952936	Uncharacterized protein; Belongs to the peptidase C14A family. (377 aa)
	LOC106952932	Uncharacterized protein; Belongs to the peptidase C14A family. (387 aa)
	casp6	Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (341 aa)
	LOC106950220	Uncharacterized protein; Belongs to the peptidase C14A family. (377 aa)
	LOC106961428	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (504 aa)
	ENSPLAP00000019050	Uncharacterized protein; Belongs to the peptidase C14A family. (347 aa)
	LOC106958504	Uncharacterized protein; Belongs to the peptidase C14A family. (474 aa)
	ENSPLAP00000019085	Uncharacterized protein; Belongs to the peptidase C14A family. (347 aa)
	casp3	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (282 aa)
	LOC106952931	Uncharacterized protein; Belongs to the peptidase C14A family. (403 aa)
	casp7	Caspase 7, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (320 aa)
	LOC106963693	Uncharacterized protein; Belongs to the peptidase C14A family. (262 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP3	ENSPLAP00000019050	ENSPLAP00000031328	ENSPLAP00000019050	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.929
CASP3	ENSPLAP00000019085	ENSPLAP00000031328	ENSPLAP00000019085	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.929
CASP3	LOC106950220	ENSPLAP00000031328	ENSPLAP00000010757	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.525
CASP3	LOC106952931	ENSPLAP00000031328	ENSPLAP00000023144	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.525
CASP3	LOC106952932	ENSPLAP00000031328	ENSPLAP00000006238	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.525
CASP3	LOC106952936	ENSPLAP00000031328	ENSPLAP00000006173	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.525
CASP3	LOC106958504	ENSPLAP00000031328	ENSPLAP00000019053	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.946
CASP3	LOC106961428	ENSPLAP00000031328	ENSPLAP00000017359	Caspase 3; Belongs to the peptidase C14A family.	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.942
CASP3	LOC106963693	ENSPLAP00000031328	ENSPLAP00000027270	Caspase 3; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.508
CASP3	casp2	ENSPLAP00000031328	ENSPLAP00000002225	Caspase 3; Belongs to the peptidase C14A family.	Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.612
CASP3	casp3	ENSPLAP00000031328	ENSPLAP00000022942	Caspase 3; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.937
CASP3	casp6	ENSPLAP00000031328	ENSPLAP00000008498	Caspase 3; Belongs to the peptidase C14A family.	Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.540
CASP3	casp9	ENSPLAP00000031328	ENSPLAP00000005968	Caspase 3; Belongs to the peptidase C14A family.	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.961
ENSPLAP00000019050	CASP3	ENSPLAP00000019050	ENSPLAP00000031328	Uncharacterized protein; Belongs to the peptidase C14A family.	Caspase 3; Belongs to the peptidase C14A family.	0.929
ENSPLAP00000019050	LOC106950220	ENSPLAP00000019050	ENSPLAP00000010757	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.906
ENSPLAP00000019050	LOC106952931	ENSPLAP00000019050	ENSPLAP00000023144	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.881
ENSPLAP00000019050	LOC106952932	ENSPLAP00000019050	ENSPLAP00000006238	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.881
ENSPLAP00000019050	LOC106952936	ENSPLAP00000019050	ENSPLAP00000006173	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.906
ENSPLAP00000019050	LOC106958504	ENSPLAP00000019050	ENSPLAP00000019053	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.894
ENSPLAP00000019050	LOC106963693	ENSPLAP00000019050	ENSPLAP00000027270	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.935