3 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbpj	Recombination signal binding protein for immunoglobulin kappa J region. (468 aa)
	LOC106939021	Recombination signal binding protein for immunoglobulin kappa J region-like. (495 aa)
	LOC106952699	Recombination signal binding protein for immunoglobulin kappa J region a. (488 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106939021	LOC106952699	ENSPLAP00000009902	ENSPLAP00000016677	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.957
LOC106939021	rbpj	ENSPLAP00000009902	ENSPLAP00000012067	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region.	0.914
LOC106952699	LOC106939021	ENSPLAP00000016677	ENSPLAP00000009902	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.957
LOC106952699	rbpj	ENSPLAP00000016677	ENSPLAP00000012067	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region.	0.923
rbpj	LOC106939021	ENSPLAP00000012067	ENSPLAP00000009902	Recombination signal binding protein for immunoglobulin kappa J region.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.914
rbpj	LOC106952699	ENSPLAP00000012067	ENSPLAP00000016677	Recombination signal binding protein for immunoglobulin kappa J region.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.923