10 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	itpr1	Inositol 1,4,5-trisphosphate receptor, type 1a. (2699 aa)
	itpr2	Inositol 1,4,5-trisphosphate receptor, type 2. (2635 aa)
	LOC106936350	Inositol 1,4,5-trisphosphate receptor, type 1b. (2662 aa)
	LOC106960988	Uncharacterized protein. (3750 aa)
	ENSPLAP00000023040	Uncharacterized protein. (1021 aa)
	ENSPLAP00000021962	Uncharacterized protein. (1031 aa)
	RYR3	Ryanodine receptor 3. (2987 aa)
	LOC106947412	Ryanodine receptor 1b (skeletal). (3777 aa)
	ENSPLAP00000004892	Uncharacterized protein. (1046 aa)
	LOC106934571	Ryanodine receptor 2b (cardiac). (4761 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004892	LOC106960988	ENSPLAP00000004892	ENSPLAP00000025088	Uncharacterized protein.	Uncharacterized protein.	0.839
ENSPLAP00000004892	RYR3	ENSPLAP00000004892	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.939
ENSPLAP00000021962	LOC106960988	ENSPLAP00000021962	ENSPLAP00000025088	Uncharacterized protein.	Uncharacterized protein.	0.845
ENSPLAP00000021962	RYR3	ENSPLAP00000021962	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.917
ENSPLAP00000023040	RYR3	ENSPLAP00000023040	ENSPLAP00000021172	Uncharacterized protein.	Ryanodine receptor 3.	0.915
LOC106934571	LOC106960988	ENSPLAP00000007519	ENSPLAP00000025088	Ryanodine receptor 2b (cardiac).	Uncharacterized protein.	0.893
LOC106936350	itpr1	ENSPLAP00000026830	ENSPLAP00000019251	Inositol 1,4,5-trisphosphate receptor, type 1b.	Inositol 1,4,5-trisphosphate receptor, type 1a.	0.896
LOC106936350	itpr2	ENSPLAP00000026830	ENSPLAP00000027103	Inositol 1,4,5-trisphosphate receptor, type 1b.	Inositol 1,4,5-trisphosphate receptor, type 2.	0.851
LOC106960988	ENSPLAP00000004892	ENSPLAP00000025088	ENSPLAP00000004892	Uncharacterized protein.	Uncharacterized protein.	0.839
LOC106960988	ENSPLAP00000021962	ENSPLAP00000025088	ENSPLAP00000021962	Uncharacterized protein.	Uncharacterized protein.	0.845
LOC106960988	LOC106934571	ENSPLAP00000025088	ENSPLAP00000007519	Uncharacterized protein.	Ryanodine receptor 2b (cardiac).	0.893
RYR3	ENSPLAP00000004892	ENSPLAP00000021172	ENSPLAP00000004892	Ryanodine receptor 3.	Uncharacterized protein.	0.939
RYR3	ENSPLAP00000021962	ENSPLAP00000021172	ENSPLAP00000021962	Ryanodine receptor 3.	Uncharacterized protein.	0.917
RYR3	ENSPLAP00000023040	ENSPLAP00000021172	ENSPLAP00000023040	Ryanodine receptor 3.	Uncharacterized protein.	0.915
itpr1	LOC106936350	ENSPLAP00000019251	ENSPLAP00000026830	Inositol 1,4,5-trisphosphate receptor, type 1a.	Inositol 1,4,5-trisphosphate receptor, type 1b.	0.896
itpr1	itpr2	ENSPLAP00000019251	ENSPLAP00000027103	Inositol 1,4,5-trisphosphate receptor, type 1a.	Inositol 1,4,5-trisphosphate receptor, type 2.	0.898
itpr2	LOC106936350	ENSPLAP00000027103	ENSPLAP00000026830	Inositol 1,4,5-trisphosphate receptor, type 2.	Inositol 1,4,5-trisphosphate receptor, type 1b.	0.851
itpr2	itpr1	ENSPLAP00000027103	ENSPLAP00000019251	Inositol 1,4,5-trisphosphate receptor, type 2.	Inositol 1,4,5-trisphosphate receptor, type 1a.	0.898