9 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	frem1	Fras1 related extracellular matrix 1a. (961 aa)
	fras1	Fraser extracellular matrix complex subunit 1. (3698 aa)
	frem3	Fras1 related extracellular matrix 3. (3113 aa)
	ENSPLAP00000015839	FRAS1 related extracellular matrix 2a. (2094 aa)
	LOC106936884	Si:dkey-193c22.2. (2407 aa)
	LOC106957509	Fras1 related extracellular matrix 1b. (1507 aa)
	LOC106957893	Uncharacterized protein. (2375 aa)
	LOC106960698	FRAS1 related extracellular matrix 2b. (3107 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2266 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000015839	LOC106957509	ENSPLAP00000015839	ENSPLAP00000012660	FRAS1 related extracellular matrix 2a.	Fras1 related extracellular matrix 1b.	0.889
ENSPLAP00000015839	LOC106960698	ENSPLAP00000015839	ENSPLAP00000004713	FRAS1 related extracellular matrix 2a.	FRAS1 related extracellular matrix 2b.	0.893
ENSPLAP00000015839	fras1	ENSPLAP00000015839	ENSPLAP00000029552	FRAS1 related extracellular matrix 2a.	Fraser extracellular matrix complex subunit 1.	0.786
ENSPLAP00000015839	frem1	ENSPLAP00000015839	ENSPLAP00000011960	FRAS1 related extracellular matrix 2a.	Fras1 related extracellular matrix 1a.	0.912
ENSPLAP00000015839	frem3	ENSPLAP00000015839	ENSPLAP00000020398	FRAS1 related extracellular matrix 2a.	Fras1 related extracellular matrix 3.	0.620
LOC106936884	LOC106957509	ENSPLAP00000015220	ENSPLAP00000012660	Si:dkey-193c22.2.	Fras1 related extracellular matrix 1b.	0.444
LOC106936884	fras1	ENSPLAP00000015220	ENSPLAP00000029552	Si:dkey-193c22.2.	Fraser extracellular matrix complex subunit 1.	0.434
LOC106936884	frem1	ENSPLAP00000015220	ENSPLAP00000011960	Si:dkey-193c22.2.	Fras1 related extracellular matrix 1a.	0.444
LOC106957509	ENSPLAP00000015839	ENSPLAP00000012660	ENSPLAP00000015839	Fras1 related extracellular matrix 1b.	FRAS1 related extracellular matrix 2a.	0.889
LOC106957509	LOC106936884	ENSPLAP00000012660	ENSPLAP00000015220	Fras1 related extracellular matrix 1b.	Si:dkey-193c22.2.	0.444
LOC106957509	LOC106957893	ENSPLAP00000012660	ENSPLAP00000005308	Fras1 related extracellular matrix 1b.	Uncharacterized protein.	0.444
LOC106957509	LOC106960698	ENSPLAP00000012660	ENSPLAP00000004713	Fras1 related extracellular matrix 1b.	FRAS1 related extracellular matrix 2b.	0.940
LOC106957509	cspg4	ENSPLAP00000012660	ENSPLAP00000001353	Fras1 related extracellular matrix 1b.	Chondroitin sulfate proteoglycan 4.	0.444
LOC106957509	fras1	ENSPLAP00000012660	ENSPLAP00000029552	Fras1 related extracellular matrix 1b.	Fraser extracellular matrix complex subunit 1.	0.937
LOC106957509	frem1	ENSPLAP00000012660	ENSPLAP00000011960	Fras1 related extracellular matrix 1b.	Fras1 related extracellular matrix 1a.	0.768
LOC106957509	frem3	ENSPLAP00000012660	ENSPLAP00000020398	Fras1 related extracellular matrix 1b.	Fras1 related extracellular matrix 3.	0.798
LOC106957893	LOC106957509	ENSPLAP00000005308	ENSPLAP00000012660	Uncharacterized protein.	Fras1 related extracellular matrix 1b.	0.444
LOC106957893	fras1	ENSPLAP00000005308	ENSPLAP00000029552	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.434
LOC106957893	frem1	ENSPLAP00000005308	ENSPLAP00000011960	Uncharacterized protein.	Fras1 related extracellular matrix 1a.	0.444
LOC106960698	ENSPLAP00000015839	ENSPLAP00000004713	ENSPLAP00000015839	FRAS1 related extracellular matrix 2b.	FRAS1 related extracellular matrix 2a.	0.893