17 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106963330	Notch receptor 1a. (2447 aa)
	ENSPLAP00000026430	HECT domain-containing protein. (88 aa)
	LOC106954657	Deltex 2, E3 ubiquitin ligase. (564 aa)
	LOC106940831	Uncharacterized protein. (777 aa)
	LOC106952138	E3 ubiquitin-protein ligase. (869 aa)
	dner	Delta/notch-like EGF repeat containing. (735 aa)
	ENSPLAP00000008816	Uncharacterized protein. (555 aa)
	ENSPLAP00000026412	Uncharacterized protein. (94 aa)
	LOC106958437	Deltex 4, E3 ubiquitin ligase a. (611 aa)
	ENSPLAP00000015949	Mindbomb E3 ubiquitin protein ligase 1. (1039 aa)
	LOC106951936	Neuralized E3 ubiquitin protein ligase 1Aa. (550 aa)
	DLK1	Delta like non-canonical Notch ligand 1. (365 aa)
	neurl1b	Neuralized E3 ubiquitin protein ligase 1B. (554 aa)
	LOC106942802	RING-type domain-containing protein. (255 aa)
	LOC106954293	Notch receptor 1b. (2443 aa)
	DTX1	Deltex E3 ubiquitin ligase 1. (642 aa)
	rps27a	Ribosomal protein S27a. (156 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLK1	LOC106954293	ENSPLAP00000023803	ENSPLAP00000025395	Delta like non-canonical Notch ligand 1.	Notch receptor 1b.	0.712
DLK1	LOC106963330	ENSPLAP00000023803	ENSPLAP00000001986	Delta like non-canonical Notch ligand 1.	Notch receptor 1a.	0.707
DLK1	rps27a	ENSPLAP00000023803	ENSPLAP00000025723	Delta like non-canonical Notch ligand 1.	Ribosomal protein S27a.	0.432
DTX1	ENSPLAP00000026412	ENSPLAP00000025417	ENSPLAP00000026412	Deltex E3 ubiquitin ligase 1.	Uncharacterized protein.	0.757
DTX1	ENSPLAP00000026430	ENSPLAP00000025417	ENSPLAP00000026430	Deltex E3 ubiquitin ligase 1.	HECT domain-containing protein.	0.757
DTX1	LOC106942802	ENSPLAP00000025417	ENSPLAP00000025029	Deltex E3 ubiquitin ligase 1.	RING-type domain-containing protein.	0.676
DTX1	LOC106952138	ENSPLAP00000025417	ENSPLAP00000012251	Deltex E3 ubiquitin ligase 1.	E3 ubiquitin-protein ligase.	0.757
DTX1	LOC106954293	ENSPLAP00000025417	ENSPLAP00000025395	Deltex E3 ubiquitin ligase 1.	Notch receptor 1b.	0.945
DTX1	LOC106963330	ENSPLAP00000025417	ENSPLAP00000001986	Deltex E3 ubiquitin ligase 1.	Notch receptor 1a.	0.945
DTX1	dner	ENSPLAP00000025417	ENSPLAP00000009462	Deltex E3 ubiquitin ligase 1.	Delta/notch-like EGF repeat containing.	0.450
DTX1	rps27a	ENSPLAP00000025417	ENSPLAP00000025723	Deltex E3 ubiquitin ligase 1.	Ribosomal protein S27a.	0.710
ENSPLAP00000008816	ENSPLAP00000015949	ENSPLAP00000008816	ENSPLAP00000015949	Uncharacterized protein.	Mindbomb E3 ubiquitin protein ligase 1.	0.596
ENSPLAP00000008816	rps27a	ENSPLAP00000008816	ENSPLAP00000025723	Uncharacterized protein.	Ribosomal protein S27a.	0.664
ENSPLAP00000015949	ENSPLAP00000008816	ENSPLAP00000015949	ENSPLAP00000008816	Mindbomb E3 ubiquitin protein ligase 1.	Uncharacterized protein.	0.596
ENSPLAP00000015949	LOC106951936	ENSPLAP00000015949	ENSPLAP00000023391	Mindbomb E3 ubiquitin protein ligase 1.	Neuralized E3 ubiquitin protein ligase 1Aa.	0.596
ENSPLAP00000015949	neurl1b	ENSPLAP00000015949	ENSPLAP00000024841	Mindbomb E3 ubiquitin protein ligase 1.	Neuralized E3 ubiquitin protein ligase 1B.	0.596
ENSPLAP00000015949	rps27a	ENSPLAP00000015949	ENSPLAP00000025723	Mindbomb E3 ubiquitin protein ligase 1.	Ribosomal protein S27a.	0.515
ENSPLAP00000026412	DTX1	ENSPLAP00000026412	ENSPLAP00000025417	Uncharacterized protein.	Deltex E3 ubiquitin ligase 1.	0.757
ENSPLAP00000026412	LOC106940831	ENSPLAP00000026412	ENSPLAP00000012723	Uncharacterized protein.	Uncharacterized protein.	0.757
ENSPLAP00000026412	LOC106952138	ENSPLAP00000026412	ENSPLAP00000012251	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.904