37 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106943239	CCR4-NOT transcription complex, subunit 8. (285 aa)
	LOC106961328	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
	cnot4	CCR4-NOT transcription complex, subunit 4a. (802 aa)
	pabpc1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	ENSPLAP00000004353	Uncharacterized protein. (137 aa)
	cnot2	CCR4-NOT transcription complex, subunit 2. (517 aa)
	ENSPLAP00000004380	Uncharacterized protein. (713 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	LOC106946362	NOT2_3_5 domain-containing protein. (520 aa)
	ENSPLAP00000006526	Uncharacterized protein. (653 aa)
	pan2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1206 aa)
	LOC106959501	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (223 aa)
	LOC106952875	CCR4-NOT transcription complex, subunit 7. (286 aa)
	paip1	Poly(A) binding protein interacting protein 1. (452 aa)
	LOC106961691	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
	cnot10	CCR4-NOT transcription complex, subunit 10. (732 aa)
	LOC106935437	Uncharacterized protein. (651 aa)
	eif4b	Eukaryotic translation initiation factor 4Bb. (639 aa)
	LOC106956119	Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (405 aa)
	cnot6l	CCR4-NOT transcription complex, subunit 6-like. (552 aa)
	LOC106937591	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (216 aa)
	cnot9	CCR4-NOT transcription complex subunit 9. (301 aa)
	cnot11	CCR4-NOT transcription complex, subunit 11. (474 aa)
	ENSPLAP00000021914	C2H2-type domain-containing protein. (183 aa)
	parn	Poly(A)-specific ribonuclease (deadenylation nuclease). (683 aa)
	LOC106961893	Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (411 aa)
	LOC106951019	CCR4-NOT transcription complex, subunit 6a. (535 aa)
	ENSPLAP00000023356	Uncharacterized protein. (116 aa)
	ENSPLAP00000023367	Uncharacterized protein. (140 aa)
	pabpc4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
	cnot3	CCR4-NOT transcription complex, subunit 3a. (899 aa)
	LOC106945030	CCR4-NOT transcription complex, subunit 3b. (905 aa)
	cnot1	CCR4-NOT transcription complex, subunit 1. (2246 aa)
	lrrc27	Uncharacterized protein. (374 aa)
	pan3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (792 aa)
	LOC106958692	Terminal uridylyl transferase 1, U6 snRNA-specific. (777 aa)
	LOC106947998	RRM domain-containing protein. (142 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000004353	ENSPLAP00000006526	ENSPLAP00000004353	ENSPLAP00000006526	Uncharacterized protein.	Uncharacterized protein.	0.402
ENSPLAP00000004353	ENSPLAP00000021914	ENSPLAP00000004353	ENSPLAP00000021914	Uncharacterized protein.	C2H2-type domain-containing protein.	0.578
ENSPLAP00000004353	LOC106935437	ENSPLAP00000004353	ENSPLAP00000013860	Uncharacterized protein.	Uncharacterized protein.	0.406
ENSPLAP00000004353	LOC106937591	ENSPLAP00000004353	ENSPLAP00000016432	Uncharacterized protein.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.414
ENSPLAP00000004353	LOC106947998	ENSPLAP00000004353	ENSPLAP00000031594	Uncharacterized protein.	RRM domain-containing protein.	0.406
ENSPLAP00000004353	LOC106956119	ENSPLAP00000004353	ENSPLAP00000014923	Uncharacterized protein.	Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family.	0.415
ENSPLAP00000004353	LOC106958692	ENSPLAP00000004353	ENSPLAP00000030724	Uncharacterized protein.	Terminal uridylyl transferase 1, U6 snRNA-specific.	0.511
ENSPLAP00000004353	LOC106961328	ENSPLAP00000004353	ENSPLAP00000000554	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.406
ENSPLAP00000004353	LOC106961691	ENSPLAP00000004353	ENSPLAP00000011447	Uncharacterized protein.	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	0.414
ENSPLAP00000004353	LOC106961893	ENSPLAP00000004353	ENSPLAP00000022879	Uncharacterized protein.	Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family.	0.415
ENSPLAP00000004353	eif4a3	ENSPLAP00000004353	ENSPLAP00000005463	Uncharacterized protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.587
ENSPLAP00000004353	eif4b	ENSPLAP00000004353	ENSPLAP00000014694	Uncharacterized protein.	Eukaryotic translation initiation factor 4Bb.	0.440
ENSPLAP00000004353	pabpc1	ENSPLAP00000004353	ENSPLAP00000002773	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.406
ENSPLAP00000004353	pabpc4	ENSPLAP00000004353	ENSPLAP00000024155	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.406
ENSPLAP00000004380	ENSPLAP00000021914	ENSPLAP00000004380	ENSPLAP00000021914	Uncharacterized protein.	C2H2-type domain-containing protein.	0.423
ENSPLAP00000004380	ENSPLAP00000023367	ENSPLAP00000004380	ENSPLAP00000023367	Uncharacterized protein.	Uncharacterized protein.	0.881
ENSPLAP00000004380	LOC106935437	ENSPLAP00000004380	ENSPLAP00000013860	Uncharacterized protein.	Uncharacterized protein.	0.406
ENSPLAP00000004380	LOC106937591	ENSPLAP00000004380	ENSPLAP00000016432	Uncharacterized protein.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.414
ENSPLAP00000004380	LOC106947998	ENSPLAP00000004380	ENSPLAP00000031594	Uncharacterized protein.	RRM domain-containing protein.	0.406
ENSPLAP00000004380	LOC106956119	ENSPLAP00000004380	ENSPLAP00000014923	Uncharacterized protein.	Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family.	0.415