56 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106955036	Uncharacterized protein. (246 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	ENSPLAP00000000084	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	sf3b4	Splicing factor 3b, subunit 4. (362 aa)
	sf3b2	Splicing factor 3b, subunit 2. (856 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	snrnp48	Small nuclear ribonucleoprotein 48 (U11/U12). (288 aa)
	snrnp25	Small nuclear ribonucleoprotein 25. (179 aa)
	ENSPLAP00000002631	Uncharacterized protein. (75 aa)
	LOC106951095	Serine and arginine rich splicing factor 7a. (257 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	ENSPLAP00000004942	SEC63 domain-containing protein. (153 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1907 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (925 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (507 aa)
	LOC106950291	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (255 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (312 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	LOC106947525	Uncharacterized protein. (250 aa)
	LOC106947524	Serine/arginine-rich splicing factor 1. (250 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (796 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (177 aa)
	zmat5	Zinc finger, matrin-type 5. (175 aa)
	pdcd7	Uncharacterized protein. (514 aa)
	srsf2	Serine and arginine rich splicing factor 2a. (236 aa)
	ENSPLAP00000020248	Uncharacterized protein. (68 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (466 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	YBX2	Y-box binding protein 2. (324 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	ybx1	Y box binding protein 1. (303 aa)
	zrsr2	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (603 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	prpf8	Pre-mRNA processing factor 8. (2323 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	srsf7	Serine and arginine rich splicing factor 7b. (229 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000084	ENSPLAP00000002631	ENSPLAP00000000084	ENSPLAP00000002631	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.999
ENSPLAP00000000084	ENSPLAP00000004942	ENSPLAP00000000084	ENSPLAP00000004942	Small nuclear ribonucleoprotein polypeptide F.	SEC63 domain-containing protein.	0.983
ENSPLAP00000000084	ENSPLAP00000011100	ENSPLAP00000000084	ENSPLAP00000011100	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPLAP00000000084	ENSPLAP00000020248	ENSPLAP00000000084	ENSPLAP00000020248	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.825
ENSPLAP00000000084	LOC106947524	ENSPLAP00000000084	ENSPLAP00000015645	Small nuclear ribonucleoprotein polypeptide F.	Serine/arginine-rich splicing factor 1.	0.898
ENSPLAP00000000084	LOC106947525	ENSPLAP00000000084	ENSPLAP00000015372	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.898
ENSPLAP00000000084	LOC106950291	ENSPLAP00000000084	ENSPLAP00000009557	Small nuclear ribonucleoprotein polypeptide F.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.431
ENSPLAP00000000084	LOC106951095	ENSPLAP00000000084	ENSPLAP00000003387	Small nuclear ribonucleoprotein polypeptide F.	Serine and arginine rich splicing factor 7a.	0.641
ENSPLAP00000000084	LOC106955036	ENSPLAP00000000084	ENSPLAP00000023234	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.898
ENSPLAP00000000084	NCBP1	ENSPLAP00000000084	ENSPLAP00000015913	Small nuclear ribonucleoprotein polypeptide F.	Nuclear cap binding protein subunit 1.	0.982
ENSPLAP00000000084	POLR2E	ENSPLAP00000000084	ENSPLAP00000011389	Small nuclear ribonucleoprotein polypeptide F.	RNA polymerase II subunit E.	0.807
ENSPLAP00000000084	YBX2	ENSPLAP00000000084	ENSPLAP00000023764	Small nuclear ribonucleoprotein polypeptide F.	Y-box binding protein 2.	0.741
ENSPLAP00000000084	ddx23	ENSPLAP00000000084	ENSPLAP00000021346	Small nuclear ribonucleoprotein polypeptide F.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.981
ENSPLAP00000000084	ddx42	ENSPLAP00000000084	ENSPLAP00000008025	Small nuclear ribonucleoprotein polypeptide F.	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	0.862
ENSPLAP00000000084	eftud2	ENSPLAP00000000084	ENSPLAP00000007888	Small nuclear ribonucleoprotein polypeptide F.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSPLAP00000000084	gtf2f2	ENSPLAP00000000084	ENSPLAP00000011758	Small nuclear ribonucleoprotein polypeptide F.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.431
ENSPLAP00000000084	ncbp2	ENSPLAP00000000084	ENSPLAP00000030930	Small nuclear ribonucleoprotein polypeptide F.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.997
ENSPLAP00000000084	pdcd7	ENSPLAP00000000084	ENSPLAP00000018449	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.821
ENSPLAP00000000084	polr2a	ENSPLAP00000000084	ENSPLAP00000005384	Small nuclear ribonucleoprotein polypeptide F.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.793
ENSPLAP00000000084	polr2b	ENSPLAP00000000084	ENSPLAP00000000044	Small nuclear ribonucleoprotein polypeptide F.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.789