(29 nodes) HDL assembly network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106959213	ATP-binding cassette, sub-family A (ABC1), member 1A. (2227 aa)
	LOC106938184	ATP-binding cassette, sub-family A (ABC1), member 1B. (164 aa)
	prkacb	Uncharacterized protein. (300 aa)
	LOC106937263	Uncharacterized protein. (1352 aa)
	smpdl3a	Acid sphingomyelinase-like phosphodiesterase. (442 aa)
	PTCHD3	Patched domain containing 3. (808 aa)
	plekhd1	Pleckstrin homology domain containing, family D (with coiled-coil domains) member 1. (467 aa)
	ENSPLAP00000014788	Uncharacterized protein. (915 aa)
	ENSPLAP00000014830	Uncharacterized protein. (287 aa)
	ENSPLAP00000015150	A2M_recep domain-containing protein. (483 aa)
	ENSPLAP00000015166	Uncharacterized protein. (367 aa)
	LOC106941471	Uncharacterized protein; Belongs to the protein kinase superfamily. (351 aa)
	ENSPLAP00000016611	ATP binding cassette subfamily A member 1. (810 aa)
	LOC106960782	Uncharacterized protein. (1476 aa)
	ptchd4	Patched domain containing 4. (905 aa)
	ENSPLAP00000018546	Uncharacterized protein. (177 aa)
	ENSPLAP00000018555	Patched domain containing 1. (539 aa)
	prkaca	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily. (333 aa)
	LOC106946593	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (351 aa)
	zdhhc8	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (724 aa)
	ENSPLAP00000020794	annotation not available (539 aa)
	LOC106944378	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (717 aa)
	LOC106937261	Uncharacterized protein. (1427 aa)
	LOC106965007	Apolipoprotein A-Ib. (263 aa)
	LOC106963783	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (813 aa)
	ENSPLAP00000027971	Uncharacterized protein. (293 aa)
	LOC106955448	Protein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily. (351 aa)
	ENSPLAP00000029106	Uncharacterized protein. (1426 aa)
	zdhhc5	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (728 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000014788	ENSPLAP00000014830	ENSPLAP00000014788	ENSPLAP00000014830	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSPLAP00000014788	LOC106965007	ENSPLAP00000014788	ENSPLAP00000024869	Uncharacterized protein.	Apolipoprotein A-Ib.	0.553
ENSPLAP00000014830	ENSPLAP00000014788	ENSPLAP00000014830	ENSPLAP00000014788	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSPLAP00000014830	LOC106965007	ENSPLAP00000014830	ENSPLAP00000024869	Uncharacterized protein.	Apolipoprotein A-Ib.	0.553
ENSPLAP00000015150	ENSPLAP00000015166	ENSPLAP00000015150	ENSPLAP00000015166	A2M_recep domain-containing protein.	Uncharacterized protein.	0.772
ENSPLAP00000015150	ENSPLAP00000027971	ENSPLAP00000015150	ENSPLAP00000027971	A2M_recep domain-containing protein.	Uncharacterized protein.	0.759
ENSPLAP00000015166	ENSPLAP00000015150	ENSPLAP00000015166	ENSPLAP00000015150	Uncharacterized protein.	A2M_recep domain-containing protein.	0.772
ENSPLAP00000016611	LOC106938184	ENSPLAP00000016611	ENSPLAP00000000526	ATP binding cassette subfamily A member 1.	ATP-binding cassette, sub-family A (ABC1), member 1B.	0.850
ENSPLAP00000016611	LOC106959213	ENSPLAP00000016611	ENSPLAP00000004844	ATP binding cassette subfamily A member 1.	ATP-binding cassette, sub-family A (ABC1), member 1A.	0.888
ENSPLAP00000016611	LOC106965007	ENSPLAP00000016611	ENSPLAP00000024869	ATP binding cassette subfamily A member 1.	Apolipoprotein A-Ib.	0.553
ENSPLAP00000018546	ENSPLAP00000018555	ENSPLAP00000018546	ENSPLAP00000018555	Uncharacterized protein.	Patched domain containing 1.	0.893
ENSPLAP00000018546	ENSPLAP00000020794	ENSPLAP00000018546	ENSPLAP00000020794	Uncharacterized protein.	annotation not available	0.893
ENSPLAP00000018555	ENSPLAP00000018546	ENSPLAP00000018555	ENSPLAP00000018546	Patched domain containing 1.	Uncharacterized protein.	0.893
ENSPLAP00000020794	ENSPLAP00000018546	ENSPLAP00000020794	ENSPLAP00000018546	annotation not available	Uncharacterized protein.	0.893
ENSPLAP00000027971	ENSPLAP00000015150	ENSPLAP00000027971	ENSPLAP00000015150	Uncharacterized protein.	A2M_recep domain-containing protein.	0.759
LOC106938184	ENSPLAP00000016611	ENSPLAP00000000526	ENSPLAP00000016611	ATP-binding cassette, sub-family A (ABC1), member 1B.	ATP binding cassette subfamily A member 1.	0.850
LOC106938184	LOC106965007	ENSPLAP00000000526	ENSPLAP00000024869	ATP-binding cassette, sub-family A (ABC1), member 1B.	Apolipoprotein A-Ib.	0.553
LOC106941471	LOC106946593	ENSPLAP00000015353	ENSPLAP00000020103	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.891
LOC106941471	LOC106955448	ENSPLAP00000015353	ENSPLAP00000028959	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily.	0.896
LOC106941471	prkaca	ENSPLAP00000015353	ENSPLAP00000018989	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.	0.891