24 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	b4galt5	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5. (382 aa)
	ENSPLAP00000012224	Uncharacterized protein. (393 aa)
	ENSPLAP00000016180	Uncharacterized protein. (182 aa)
	LOC106940656	Uncharacterized protein. (352 aa)
	mgat4a	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A. (533 aa)
	b4galt4	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4. (348 aa)
	LOC106964729	Si:dkey-199f5.8. (388 aa)
	ST8SIA3	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3; Belongs to the glycosyltransferase 29 family. (377 aa)
	MGAT4C	MGAT4 family member C. (487 aa)
	st3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4; Belongs to the glycosyltransferase 29 family. (339 aa)
	LOC106936559	Uncharacterized protein. (587 aa)
	LOC106944964	Uncharacterized protein. (349 aa)
	mgat4c	Mgat4 family member C. (477 aa)
	mgat4b	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B. (464 aa)
	mgat5	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase. (741 aa)
	LOC106940657	Uncharacterized protein. (338 aa)
	b4galt1	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like. (367 aa)
	ENSPLAP00000001640	Uncharacterized protein. (248 aa)
	LOC106940382	PH domain-containing protein; Belongs to the glycosyltransferase 29 family. (405 aa)
	ENSPLAP00000002642	Uncharacterized protein. (60 aa)
	ENSPLAP00000004414	Uncharacterized protein. (69 aa)
	mgat5b	Uncharacterized protein. (752 aa)
	LOC106952195	Uncharacterized protein. (541 aa)
	LOC106959659	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3. (428 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000001640	ENSPLAP00000002642	ENSPLAP00000001640	ENSPLAP00000002642	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000001640	ENSPLAP00000004414	ENSPLAP00000001640	ENSPLAP00000004414	Uncharacterized protein.	Uncharacterized protein.	0.750
ENSPLAP00000001640	LOC106936559	ENSPLAP00000001640	ENSPLAP00000023858	Uncharacterized protein.	Uncharacterized protein.	0.472
ENSPLAP00000001640	LOC106952195	ENSPLAP00000001640	ENSPLAP00000010452	Uncharacterized protein.	Uncharacterized protein.	0.750
ENSPLAP00000001640	LOC106959659	ENSPLAP00000001640	ENSPLAP00000010524	Uncharacterized protein.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3.	0.480
ENSPLAP00000001640	LOC106964729	ENSPLAP00000001640	ENSPLAP00000021119	Uncharacterized protein.	Si:dkey-199f5.8.	0.480
ENSPLAP00000001640	b4galt1	ENSPLAP00000001640	ENSPLAP00000000030	Uncharacterized protein.	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	0.606
ENSPLAP00000001640	b4galt4	ENSPLAP00000001640	ENSPLAP00000019929	Uncharacterized protein.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4.	0.485
ENSPLAP00000001640	b4galt5	ENSPLAP00000001640	ENSPLAP00000011416	Uncharacterized protein.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5.	0.447
ENSPLAP00000001640	mgat5	ENSPLAP00000001640	ENSPLAP00000028486	Uncharacterized protein.	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase.	0.520
ENSPLAP00000001640	mgat5b	ENSPLAP00000001640	ENSPLAP00000006059	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSPLAP00000002642	ENSPLAP00000001640	ENSPLAP00000002642	ENSPLAP00000001640	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000002642	ENSPLAP00000016180	ENSPLAP00000002642	ENSPLAP00000016180	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000002642	LOC106940656	ENSPLAP00000002642	ENSPLAP00000016251	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000002642	LOC106940657	ENSPLAP00000002642	ENSPLAP00000029806	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000002642	LOC106944964	ENSPLAP00000002642	ENSPLAP00000026888	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSPLAP00000002642	LOC106959659	ENSPLAP00000002642	ENSPLAP00000010524	Uncharacterized protein.	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3.	0.649
ENSPLAP00000002642	LOC106964729	ENSPLAP00000002642	ENSPLAP00000021119	Uncharacterized protein.	Si:dkey-199f5.8.	0.649
ENSPLAP00000002642	MGAT4C	ENSPLAP00000002642	ENSPLAP00000022160	Uncharacterized protein.	MGAT4 family member C.	0.676
ENSPLAP00000002642	b4galt1	ENSPLAP00000002642	ENSPLAP00000000030	Uncharacterized protein.	DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like.	0.649