(4 nodes) Transcription factor TFIID (or TATA-binding protein, TBP) network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPLAP00000024302	Uncharacterized protein. (284 aa)
	tbp	TATA box binding protein. (304 aa)
	ENSPLAP00000012054	Uncharacterized protein. (229 aa)
	tbpl1	TBP-like 1. (143 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000012054	ENSPLAP00000024302	ENSPLAP00000012054	ENSPLAP00000024302	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSPLAP00000012054	tbp	ENSPLAP00000012054	ENSPLAP00000011405	Uncharacterized protein.	TATA box binding protein.	0.911
ENSPLAP00000012054	tbpl1	ENSPLAP00000012054	ENSPLAP00000022043	Uncharacterized protein.	TBP-like 1.	0.930
ENSPLAP00000024302	ENSPLAP00000012054	ENSPLAP00000024302	ENSPLAP00000012054	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSPLAP00000024302	tbpl1	ENSPLAP00000024302	ENSPLAP00000022043	Uncharacterized protein.	TBP-like 1.	0.752
tbp	ENSPLAP00000012054	ENSPLAP00000011405	ENSPLAP00000012054	TATA box binding protein.	Uncharacterized protein.	0.911
tbp	tbpl1	ENSPLAP00000011405	ENSPLAP00000022043	TATA box binding protein.	TBP-like 1.	0.963
tbpl1	ENSPLAP00000012054	ENSPLAP00000022043	ENSPLAP00000012054	TBP-like 1.	Uncharacterized protein.	0.930
tbpl1	ENSPLAP00000024302	ENSPLAP00000022043	ENSPLAP00000024302	TBP-like 1.	Uncharacterized protein.	0.752
tbpl1	tbp	ENSPLAP00000022043	ENSPLAP00000011405	TBP-like 1.	TATA box binding protein.	0.963