(10 nodes) Domain present in ubiquitin-regulatory proteins network (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubxn7	UBX domain protein 7. (526 aa)
	ubxn2a	UBX domain protein 2A. (235 aa)
	UBXN4	UBX domain protein 4. (516 aa)
	ubxn1	UBX domain protein 1. (303 aa)
	aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing. (555 aa)
	nsfl1c	NSFL1 (p97) cofactor (p47). (374 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (680 aa)
	ubxn6	UBX domain protein 6. (438 aa)
	LOC106942570	Si:ch73-173p19.1. (899 aa)
	ENSPLAP00000029134	UBX domain protein 10. (231 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000029134	UBXN4	ENSPLAP00000029134	ENSPLAP00000015854	UBX domain protein 10.	UBX domain protein 4.	0.523
ENSPLAP00000029134	aspscr1	ENSPLAP00000029134	ENSPLAP00000019479	UBX domain protein 10.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.971
ENSPLAP00000029134	faf1	ENSPLAP00000029134	ENSPLAP00000021567	UBX domain protein 10.	Fas (TNFRSF6) associated factor 1.	0.404
ENSPLAP00000029134	nsfl1c	ENSPLAP00000029134	ENSPLAP00000019922	UBX domain protein 10.	NSFL1 (p97) cofactor (p47).	0.959
ENSPLAP00000029134	ubxn1	ENSPLAP00000029134	ENSPLAP00000018626	UBX domain protein 10.	UBX domain protein 1.	0.537
ENSPLAP00000029134	ubxn2a	ENSPLAP00000029134	ENSPLAP00000014343	UBX domain protein 10.	UBX domain protein 2A.	0.978
ENSPLAP00000029134	ubxn6	ENSPLAP00000029134	ENSPLAP00000026368	UBX domain protein 10.	UBX domain protein 6.	0.978
ENSPLAP00000029134	ubxn7	ENSPLAP00000029134	ENSPLAP00000030908	UBX domain protein 10.	UBX domain protein 7.	0.594
UBXN4	ENSPLAP00000029134	ENSPLAP00000015854	ENSPLAP00000029134	UBX domain protein 4.	UBX domain protein 10.	0.523
UBXN4	aspscr1	ENSPLAP00000015854	ENSPLAP00000019479	UBX domain protein 4.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.971
UBXN4	faf1	ENSPLAP00000015854	ENSPLAP00000021567	UBX domain protein 4.	Fas (TNFRSF6) associated factor 1.	0.808
UBXN4	nsfl1c	ENSPLAP00000015854	ENSPLAP00000019922	UBX domain protein 4.	NSFL1 (p97) cofactor (p47).	0.960
UBXN4	ubxn1	ENSPLAP00000015854	ENSPLAP00000018626	UBX domain protein 4.	UBX domain protein 1.	0.944
UBXN4	ubxn2a	ENSPLAP00000015854	ENSPLAP00000014343	UBX domain protein 4.	UBX domain protein 2A.	0.959
UBXN4	ubxn6	ENSPLAP00000015854	ENSPLAP00000026368	UBX domain protein 4.	UBX domain protein 6.	0.998
UBXN4	ubxn7	ENSPLAP00000015854	ENSPLAP00000030908	UBX domain protein 4.	UBX domain protein 7.	0.594
aspscr1	ENSPLAP00000029134	ENSPLAP00000019479	ENSPLAP00000029134	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 10.	0.971
aspscr1	UBXN4	ENSPLAP00000019479	ENSPLAP00000015854	ASPSCR1 tether for SLC2A4, UBX domain containing.	UBX domain protein 4.	0.971
aspscr1	faf1	ENSPLAP00000019479	ENSPLAP00000021567	ASPSCR1 tether for SLC2A4, UBX domain containing.	Fas (TNFRSF6) associated factor 1.	0.988
aspscr1	nsfl1c	ENSPLAP00000019479	ENSPLAP00000019922	ASPSCR1 tether for SLC2A4, UBX domain containing.	NSFL1 (p97) cofactor (p47).	0.986