17 items (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	ENSPLAP00000011100	Small nuclear ribonucleoprotein-associated protein. (230 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	lsm10	LSM10, U7 small nuclear RNA associated. (131 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (129 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (109 aa)
	ENSPLAP00000000084	Small nuclear ribonucleoprotein polypeptide F. (85 aa)

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000084	ENSPLAP00000011100	ENSPLAP00000000084	ENSPLAP00000011100	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPLAP00000000084	lsm1	ENSPLAP00000000084	ENSPLAP00000005861	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.848
ENSPLAP00000000084	lsm10	ENSPLAP00000000084	ENSPLAP00000013093	Small nuclear ribonucleoprotein polypeptide F.	LSM10, U7 small nuclear RNA associated.	0.999
ENSPLAP00000000084	lsm2	ENSPLAP00000000084	ENSPLAP00000028079	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
ENSPLAP00000000084	lsm3	ENSPLAP00000000084	ENSPLAP00000019977	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSPLAP00000000084	lsm4	ENSPLAP00000000084	ENSPLAP00000027560	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.988
ENSPLAP00000000084	lsm5	ENSPLAP00000000084	ENSPLAP00000007344	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
ENSPLAP00000000084	lsm6	ENSPLAP00000000084	ENSPLAP00000020350	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.986
ENSPLAP00000000084	lsm7	ENSPLAP00000000084	ENSPLAP00000008774	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSPLAP00000000084	lsm8	ENSPLAP00000000084	ENSPLAP00000009513	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.992
ENSPLAP00000000084	naa38	ENSPLAP00000000084	ENSPLAP00000001613	Small nuclear ribonucleoprotein polypeptide F.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.971
ENSPLAP00000000084	snrpd1	ENSPLAP00000000084	ENSPLAP00000004927	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSPLAP00000000084	snrpd2	ENSPLAP00000000084	ENSPLAP00000008218	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPLAP00000000084	snrpd3	ENSPLAP00000000084	ENSPLAP00000031332	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSPLAP00000000084	snrpe	ENSPLAP00000000084	ENSPLAP00000003493	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPLAP00000000084	snrpg	ENSPLAP00000000084	ENSPLAP00000005394	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
ENSPLAP00000011100	ENSPLAP00000000084	ENSPLAP00000011100	ENSPLAP00000000084	Small nuclear ribonucleoprotein-associated protein.	Small nuclear ribonucleoprotein polypeptide F.	0.997
ENSPLAP00000011100	lsm1	ENSPLAP00000011100	ENSPLAP00000005861	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.527
ENSPLAP00000011100	lsm10	ENSPLAP00000011100	ENSPLAP00000013093	Small nuclear ribonucleoprotein-associated protein.	LSM10, U7 small nuclear RNA associated.	0.974
ENSPLAP00000011100	lsm2	ENSPLAP00000011100	ENSPLAP00000028079	Small nuclear ribonucleoprotein-associated protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969