5 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl13	Mitochondrial ribosomal protein L13. (277 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (167 aa)
	LOC106927361	Mitochondrial ribosomal protein L23. (154 aa)
	mrpl47	Mitochondrial ribosomal protein L47. (259 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (283 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106927361	mrpl13	ENSPMEP00000010296	ENSPMEP00000001144	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L13.	0.999
LOC106927361	mrpl17	ENSPMEP00000010296	ENSPMEP00000009945	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
LOC106927361	mrpl19	ENSPMEP00000010296	ENSPMEP00000029471	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L19.	0.999
LOC106927361	mrpl47	ENSPMEP00000010296	ENSPMEP00000027828	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L47.	0.998
mrpl13	LOC106927361	ENSPMEP00000001144	ENSPMEP00000010296	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L23.	0.999
mrpl13	mrpl17	ENSPMEP00000001144	ENSPMEP00000009945	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
mrpl13	mrpl19	ENSPMEP00000001144	ENSPMEP00000029471	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L19.	0.999
mrpl13	mrpl47	ENSPMEP00000001144	ENSPMEP00000027828	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L47.	0.997
mrpl17	LOC106927361	ENSPMEP00000009945	ENSPMEP00000010296	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Mitochondrial ribosomal protein L23.	0.998
mrpl17	mrpl13	ENSPMEP00000009945	ENSPMEP00000001144	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Mitochondrial ribosomal protein L13.	0.999
mrpl17	mrpl19	ENSPMEP00000009945	ENSPMEP00000029471	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Mitochondrial ribosomal protein L19.	0.999
mrpl17	mrpl47	ENSPMEP00000009945	ENSPMEP00000027828	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Mitochondrial ribosomal protein L47.	0.999
mrpl19	LOC106927361	ENSPMEP00000029471	ENSPMEP00000010296	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L23.	0.999
mrpl19	mrpl13	ENSPMEP00000029471	ENSPMEP00000001144	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L13.	0.999
mrpl19	mrpl17	ENSPMEP00000029471	ENSPMEP00000009945	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
mrpl19	mrpl47	ENSPMEP00000029471	ENSPMEP00000027828	Mitochondrial ribosomal protein L19.	Mitochondrial ribosomal protein L47.	0.998
mrpl47	LOC106927361	ENSPMEP00000027828	ENSPMEP00000010296	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L23.	0.998
mrpl47	mrpl13	ENSPMEP00000027828	ENSPMEP00000001144	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L13.	0.997
mrpl47	mrpl17	ENSPMEP00000027828	ENSPMEP00000009945	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
mrpl47	mrpl19	ENSPMEP00000027828	ENSPMEP00000029471	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L19.	0.998