(16 nodes) Phosphatidyl phospholipase B activity, and Glycerophospholipid catabolism network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMEP00000002757	Uncharacterized protein. (199 aa)
	ENSPMEP00000005021	Phospholipase A2, group XV. (234 aa)
	LOC106907380	Phospholipase A2, group XV. (388 aa)
	pnpla7	Uncharacterized protein. (1300 aa)
	ENSPMEP00000012748	Ectonucleotide pyrophosphatase/phosphodiesterase 6. (391 aa)
	tmem86b	Transmembrane protein 86B. (252 aa)
	LOC106930519	Patatin-like phospholipase domain containing 7b. (1319 aa)
	gdpd1	Glycerophosphodiester phosphodiesterase domain containing 1. (317 aa)
	ENSPMEP00000018763	Si:dkey-177p2.18. (398 aa)
	lpcat4	Lysophosphatidylcholine acyltransferase 4. (551 aa)
	enpp2	Ectonucleotide pyrophosphatase/phosphodiesterase 2. (839 aa)
	pnpla6	Patatin-like phospholipase domain containing 6. (1229 aa)
	LOC106933156	LRAT domain-containing protein. (177 aa)
	lypla1	Lysophospholipase 1. (246 aa)
	LOC106919938	Uncharacterized protein. (855 aa)
	LOC106907005	Glycerophosphodiester phosphodiesterase domain containing 3a. (350 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000002757	ENSPMEP00000005021	ENSPMEP00000002757	ENSPMEP00000005021	Uncharacterized protein.	Phospholipase A2, group XV.	0.902
ENSPMEP00000002757	ENSPMEP00000012748	ENSPMEP00000002757	ENSPMEP00000012748	Uncharacterized protein.	Ectonucleotide pyrophosphatase/phosphodiesterase 6.	0.903
ENSPMEP00000002757	ENSPMEP00000018763	ENSPMEP00000002757	ENSPMEP00000018763	Uncharacterized protein.	Si:dkey-177p2.18.	0.910
ENSPMEP00000002757	LOC106907005	ENSPMEP00000002757	ENSPMEP00000034740	Uncharacterized protein.	Glycerophosphodiester phosphodiesterase domain containing 3a.	0.898
ENSPMEP00000002757	LOC106907380	ENSPMEP00000002757	ENSPMEP00000005038	Uncharacterized protein.	Phospholipase A2, group XV.	0.902
ENSPMEP00000002757	LOC106919938	ENSPMEP00000002757	ENSPMEP00000032473	Uncharacterized protein.	Uncharacterized protein.	0.902
ENSPMEP00000002757	LOC106930519	ENSPMEP00000002757	ENSPMEP00000017249	Uncharacterized protein.	Patatin-like phospholipase domain containing 7b.	0.913
ENSPMEP00000002757	LOC106933156	ENSPMEP00000002757	ENSPMEP00000029882	Uncharacterized protein.	LRAT domain-containing protein.	0.687
ENSPMEP00000002757	enpp2	ENSPMEP00000002757	ENSPMEP00000020159	Uncharacterized protein.	Ectonucleotide pyrophosphatase/phosphodiesterase 2.	0.846
ENSPMEP00000002757	gdpd1	ENSPMEP00000002757	ENSPMEP00000018717	Uncharacterized protein.	Glycerophosphodiester phosphodiesterase domain containing 1.	0.813
ENSPMEP00000002757	lpcat4	ENSPMEP00000002757	ENSPMEP00000019138	Uncharacterized protein.	Lysophosphatidylcholine acyltransferase 4.	0.900
ENSPMEP00000002757	lypla1	ENSPMEP00000002757	ENSPMEP00000031095	Uncharacterized protein.	Lysophospholipase 1.	0.932
ENSPMEP00000002757	pnpla6	ENSPMEP00000002757	ENSPMEP00000024156	Uncharacterized protein.	Patatin-like phospholipase domain containing 6.	0.929
ENSPMEP00000002757	pnpla7	ENSPMEP00000002757	ENSPMEP00000006774	Uncharacterized protein.	Uncharacterized protein.	0.913
ENSPMEP00000002757	tmem86b	ENSPMEP00000002757	ENSPMEP00000016692	Uncharacterized protein.	Transmembrane protein 86B.	0.901
ENSPMEP00000005021	ENSPMEP00000002757	ENSPMEP00000005021	ENSPMEP00000002757	Phospholipase A2, group XV.	Uncharacterized protein.	0.902
ENSPMEP00000005021	ENSPMEP00000018763	ENSPMEP00000005021	ENSPMEP00000018763	Phospholipase A2, group XV.	Si:dkey-177p2.18.	0.902
ENSPMEP00000005021	LOC106907005	ENSPMEP00000005021	ENSPMEP00000034740	Phospholipase A2, group XV.	Glycerophosphodiester phosphodiesterase domain containing 3a.	0.500
ENSPMEP00000005021	LOC106930519	ENSPMEP00000005021	ENSPMEP00000017249	Phospholipase A2, group XV.	Patatin-like phospholipase domain containing 7b.	0.917
ENSPMEP00000005021	LOC106933156	ENSPMEP00000005021	ENSPMEP00000029882	Phospholipase A2, group XV.	LRAT domain-containing protein.	0.693