26 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (685 aa)
	LOC106906125	Uncharacterized protein. (441 aa)
	sema4g	Uncharacterized protein; Belongs to the semaphorin family. (835 aa)
	LOC106928996	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (764 aa)
	plxnb1	Plexin b1b. (2193 aa)
	ENSPMEP00000003807	Plexin_cytopl domain-containing protein. (47 aa)
	ENSPMEP00000005866	FCH domain-containing protein. (101 aa)
	LOC106917766	Si:ch211-129c21.1; Belongs to the semaphorin family. (804 aa)
	SEMA4D	Uncharacterized protein; Belongs to the semaphorin family. (883 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (919 aa)
	ENSPMEP00000011832	Uncharacterized protein. (383 aa)
	LOC106918080	Uncharacterized protein; Belongs to the semaphorin family. (880 aa)
	LOC106915444	Plexin b1a. (2162 aa)
	ENSPMEP00000018443	Sema domain-containing protein. (443 aa)
	LOC106907692	Plexin_cytopl domain-containing protein. (74 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (801 aa)
	LOC106915081	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (853 aa)
	plxna1	Sema domain-containing protein. (1948 aa)
	ENSPMEP00000028105	Uncharacterized protein. (328 aa)
	LOC106911984	Sema domain-containing protein; Belongs to the semaphorin family. (638 aa)
	LOC106922715	Sema domain-containing protein. (1783 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (861 aa)
	LOC106918638	Semaphorin 4e; Belongs to the semaphorin family. (753 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (784 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (809 aa)
	plxna4	Plexin A4. (1375 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000003807	ENSPMEP00000005866	ENSPMEP00000003807	ENSPMEP00000005866	Plexin_cytopl domain-containing protein.	FCH domain-containing protein.	0.526
ENSPMEP00000003807	ENSPMEP00000028105	ENSPMEP00000003807	ENSPMEP00000028105	Plexin_cytopl domain-containing protein.	Uncharacterized protein.	0.510
ENSPMEP00000003807	LOC106906125	ENSPMEP00000003807	ENSPMEP00000001709	Plexin_cytopl domain-containing protein.	Uncharacterized protein.	0.482
ENSPMEP00000003807	LOC106911984	ENSPMEP00000003807	ENSPMEP00000029476	Plexin_cytopl domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.626
ENSPMEP00000003807	LOC106915081	ENSPMEP00000003807	ENSPMEP00000024361	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.668
ENSPMEP00000003807	LOC106917766	ENSPMEP00000003807	ENSPMEP00000006320	Plexin_cytopl domain-containing protein.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.626
ENSPMEP00000003807	LOC106918080	ENSPMEP00000003807	ENSPMEP00000014558	Plexin_cytopl domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.510
ENSPMEP00000003807	LOC106918638	ENSPMEP00000003807	ENSPMEP00000032820	Plexin_cytopl domain-containing protein.	Semaphorin 4e; Belongs to the semaphorin family.	0.626
ENSPMEP00000003807	LOC106928996	ENSPMEP00000003807	ENSPMEP00000002957	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family.	0.589
ENSPMEP00000003807	SEMA4D	ENSPMEP00000003807	ENSPMEP00000007198	Plexin_cytopl domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.626
ENSPMEP00000003807	nrp1	ENSPMEP00000003807	ENSPMEP00000011003	Plexin_cytopl domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.812
ENSPMEP00000003807	sema3a	ENSPMEP00000003807	ENSPMEP00000021038	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.626
ENSPMEP00000003807	sema3b	ENSPMEP00000003807	ENSPMEP00000033041	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family.	0.675
ENSPMEP00000003807	sema3e	ENSPMEP00000003807	ENSPMEP00000000225	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.680
ENSPMEP00000003807	sema3g	ENSPMEP00000003807	ENSPMEP00000033020	Plexin_cytopl domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.679
ENSPMEP00000003807	sema4c	ENSPMEP00000003807	ENSPMEP00000031297	Plexin_cytopl domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.510
ENSPMEP00000003807	sema4g	ENSPMEP00000003807	ENSPMEP00000002922	Plexin_cytopl domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.510
ENSPMEP00000005866	ENSPMEP00000003807	ENSPMEP00000005866	ENSPMEP00000003807	FCH domain-containing protein.	Plexin_cytopl domain-containing protein.	0.526
ENSPMEP00000005866	ENSPMEP00000011832	ENSPMEP00000005866	ENSPMEP00000011832	FCH domain-containing protein.	Uncharacterized protein.	0.526
ENSPMEP00000005866	ENSPMEP00000018443	ENSPMEP00000005866	ENSPMEP00000018443	FCH domain-containing protein.	Sema domain-containing protein.	0.485