5 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (685 aa)
	LOC106906125	Uncharacterized protein. (441 aa)
	ENSPMEP00000011832	Uncharacterized protein. (383 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (784 aa)
	plxna4	Plexin A4. (1375 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000011832	LOC106906125	ENSPMEP00000011832	ENSPMEP00000001709	Uncharacterized protein.	Uncharacterized protein.	0.476
ENSPMEP00000011832	sema3e	ENSPMEP00000011832	ENSPMEP00000000225	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.775
ENSPMEP00000011832	sema3g	ENSPMEP00000011832	ENSPMEP00000033020	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.679
LOC106906125	ENSPMEP00000011832	ENSPMEP00000001709	ENSPMEP00000011832	Uncharacterized protein.	Uncharacterized protein.	0.476
LOC106906125	plxna4	ENSPMEP00000001709	ENSPMEP00000034554	Uncharacterized protein.	Plexin A4.	0.482
LOC106906125	sema3e	ENSPMEP00000001709	ENSPMEP00000000225	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.781
LOC106906125	sema3g	ENSPMEP00000001709	ENSPMEP00000033020	Uncharacterized protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.687
plxna4	LOC106906125	ENSPMEP00000034554	ENSPMEP00000001709	Plexin A4.	Uncharacterized protein.	0.482
plxna4	sema3e	ENSPMEP00000034554	ENSPMEP00000000225	Plexin A4.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	0.680
plxna4	sema3g	ENSPMEP00000034554	ENSPMEP00000033020	Plexin A4.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	0.679
sema3e	ENSPMEP00000011832	ENSPMEP00000000225	ENSPMEP00000011832	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	Uncharacterized protein.	0.775
sema3e	LOC106906125	ENSPMEP00000000225	ENSPMEP00000001709	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	Uncharacterized protein.	0.781
sema3e	plxna4	ENSPMEP00000000225	ENSPMEP00000034554	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.	Plexin A4.	0.680
sema3g	ENSPMEP00000011832	ENSPMEP00000033020	ENSPMEP00000011832	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	Uncharacterized protein.	0.679
sema3g	LOC106906125	ENSPMEP00000033020	ENSPMEP00000001709	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	Uncharacterized protein.	0.687
sema3g	plxna4	ENSPMEP00000033020	ENSPMEP00000034554	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.	Plexin A4.	0.679