STRINGSTRING
prpf6 prpf6 prpf19 prpf19 snrpd3 snrpd3 gemin5 gemin5 clns1a clns1a lsm4 lsm4 gemin7 gemin7 snrpc snrpc snrpd2 snrpd2 ddx20 ddx20 LOC106918726 LOC106918726 prpf31 prpf31 strap strap ENSPMEP00000002318 ENSPMEP00000002318 snrpd1 snrpd1 prpf3 prpf3 prpf8 prpf8 snrpe snrpe ENSPMEP00000021468 ENSPMEP00000021468 sart3 sart3 SNRPN SNRPN lsm2 lsm2 gemin6 gemin6 snrpg snrpg prmt7 prmt7 gemin4 gemin4 prmt5 prmt5 gemin2 gemin2 gemin8 gemin8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1428 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (248 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
gemin7Gem (nuclear organelle) associated protein 7. (128 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (765 aa)
LOC106918726Survival of motor neuron 1, telomeric. (283 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
strapSerine/threonine kinase receptor associated protein. (316 aa)
ENSPMEP00000002318Small nuclear ribonucleoprotein polypeptide F. (85 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
prpf8Pre-mRNA processing factor 8. (2358 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
ENSPMEP00000021468Protein arginine methyltransferase 7; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (327 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (945 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
gemin6Gem (nuclear organelle) associated protein 6. (249 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
prmt7Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being r [...] (685 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1117 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (641 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
gemin8Gem (nuclear organelle) associated protein 8. (198 aa)
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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