STRINGSTRING
cwc27 cwc27 slu7 slu7 cwc15 cwc15 cdc5l cdc5l ENSPMEP00000000741 ENSPMEP00000000741 tra2b tra2b bud13 bud13 usp39 usp39 rbm41 rbm41 LOC106911459 LOC106911459 ENSPMEP00000001665 ENSPMEP00000001665 u2af2 u2af2 DDX41 DDX41 ENSPMEP00000002318 ENSPMEP00000002318 ENSPMEP00000002500 ENSPMEP00000002500 rnpc3 rnpc3 lsm6 lsm6 ctnnbl1 ctnnbl1 sf3b6 sf3b6 ENSPMEP00000003442 ENSPMEP00000003442 LOC106905282 LOC106905282 eftud2 eftud2 zcrb1 zcrb1 sf1 sf1 LOC106912312 LOC106912312 bcas2 bcas2 dhx16 dhx16 hnrnpk hnrnpk prpf4 prpf4 rbmx rbmx rbm22 rbm22 LOC106929519 LOC106929519 eif4a3 eif4a3 tfip11 tfip11 snrnp70 snrnp70 snrpd3 snrpd3 prpf19 prpf19 DHX32 DHX32 crnkl1 crnkl1 zmat5 zmat5 LOC106924973 LOC106924973 ccdc130 ccdc130 bud31 bud31 prpf6 prpf6 phf5a phf5a LOC106907270 LOC106907270 LOC106912402 LOC106912402 ENSPMEP00000008527 ENSPMEP00000008527 snrpb2 snrpb2 ENSPMEP00000008731 ENSPMEP00000008731 ncmap ncmap gemin2 gemin2 lsm7 lsm7 ENSPMEP00000009895 ENSPMEP00000009895 SRRM3 SRRM3 xab2 xab2 smndc1 smndc1 LOC106927354 LOC106927354 LOC106931424 LOC106931424 snrpa snrpa ppil1 ppil1 ppp1r8 ppp1r8 SART1 SART1 cirbp cirbp myef2 myef2 lix1l lix1l snrnp40 snrnp40 syncrip syncrip rbm17 rbm17 MYEF2 MYEF2 ppih ppih snrpa1 snrpa1 pdcd7 pdcd7 htatsf1 htatsf1 prpf39 prpf39 cwf19l2 cwf19l2 cwf19l1 cwf19l1 ENSPMEP00000015070 ENSPMEP00000015070 ENSPMEP00000015289 ENSPMEP00000015289 snrnp48 snrnp48 ENSPMEP00000015593 ENSPMEP00000015593 wbp11 wbp11 snrpg snrpg luc7l3 luc7l3 SNIP1 SNIP1 DHX15 DHX15 LOC106919282 LOC106919282 SMU1 SMU1 lsm2 lsm2 ppie ppie sf3b3 sf3b3 luc7l luc7l sf3b5 sf3b5 ess2 ess2 plrg1 plrg1 SNRPN SNRPN cactin cactin sf3b1 sf3b1 snrnp200 snrnp200 sf3a3 sf3a3 ppil3 ppil3 TRA2B TRA2B prpf40a prpf40a lsm5 lsm5 mfap1 mfap1 ccdc12 ccdc12 txnl4b txnl4b wbp4 wbp4 LOC106917271 LOC106917271 ZNF830 ZNF830 cwc25 cwc25 zrsr2 zrsr2 zmat2 zmat2 snrpe snrpe SUGP1 SUGP1 prpf4b prpf4b gpkow gpkow LOC106930308 LOC106930308 LOC106927112 LOC106927112 dhx35 dhx35 prpf8 prpf8 aqr aqr prpf38b prpf38b dqx1 dqx1 prpf18 prpf18 snrpd2 snrpd2 cwc22 cwc22 adar adar dnajc17 dnajc17 dhx34 dhx34 dhx8 dhx8 LOC106914995 LOC106914995 ppwd1 ppwd1 txnl4a txnl4a sf3a2 sf3a2 wdr83 wdr83 aar2 aar2 snrpc snrpc mtrex mtrex rnf113a rnf113a WDR25 WDR25 hnrnpm hnrnpm pnn pnn syf2 syf2 prpf38a prpf38a LOC106920762 LOC106920762 ppil2 ppil2 snw1 snw1 sf3b2 sf3b2 rbm8a rbm8a shd shd yju2 yju2 cdc40 cdc40 ddx23 ddx23 dhx38 dhx38 LOC106925423 LOC106925423 lsm4 lsm4 LOC106924735 LOC106924735 LOC106928616 LOC106928616 DHX15-2 DHX15-2 LOC106918726 LOC106918726 gpatch1 gpatch1 prpf31 prpf31 zcchc8 zcchc8 ENSPMEP00000032120 ENSPMEP00000032120 LOC106903466 LOC106903466 ENSPMEP00000032955 ENSPMEP00000032955 rbmx2 rbmx2 snrpd1 snrpd1 lsm3 lsm3 lsm8 lsm8 snu13 snu13 ENSPMEP00000034198 ENSPMEP00000034198 prpf3 prpf3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cwc27CWC27 spliceosome associated cyclophilin. (473 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (809 aa)
ENSPMEP00000000741WD_REPEATS_REGION domain-containing protein. (121 aa)
tra2bTransformer 2 beta homolog. (276 aa)
bud13BUD13 homolog. (513 aa)
usp39Ubiquitin specific peptidase 39. (512 aa)
rbm41RNA binding motif protein 41. (440 aa)
LOC106911459Serine/arginine repetitive matrix 1. (794 aa)
ENSPMEP00000001665PWI domain-containing protein. (79 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
DDX41DEAD-box helicase 41. (615 aa)
ENSPMEP00000002318Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSPMEP00000002500Uncharacterized protein. (110 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (520 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
ctnnbl1Catenin, beta like 1. (539 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
ENSPMEP00000003442PRKR interacting protein 1. (165 aa)
LOC106905282RRM domain-containing protein. (306 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
sf1Splicing factor 1. (676 aa)
LOC106912312DEAH (Asp-Glu-Ala-His) box polypeptide 32a. (733 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1052 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (436 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
rbmxRNA binding motif protein X-linked. (383 aa)
rbm22RNA binding motif protein 22. (408 aa)
LOC106929519Uncharacterized protein. (228 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (466 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
DHX32Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (733 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (736 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
LOC106924973Heterogeneous nuclear ribonucleoprotein R. (620 aa)
ccdc130Coiled-coil domain containing 130. (393 aa)
bud31BUD31 homolog. (144 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
phf5aPHD finger protein 5A. (110 aa)
LOC106907270Galectin. (277 aa)
LOC106912402Heterogeneous nuclear ribonucleoprotein K, like. (465 aa)
ENSPMEP00000008527Casc3 exon junction complex subunit. (584 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
ENSPMEP00000008731Helicase ATP-binding domain-containing protein. (234 aa)
ncmapUncharacterized protein. (138 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (113 aa)
ENSPMEP00000009895annotation not available (79 aa)
SRRM3Serine/arginine repetitive matrix 3. (637 aa)
xab2XPA binding protein 2. (849 aa)
smndc1Survival motor neuron domain containing 1. (238 aa)
LOC106927354Galectin. (330 aa)
LOC106931424Zgc:153119. (295 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (218 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
ppp1r8Protein phosphatase 1, regulatory subunit 8b. (349 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
cirbpCold inducible RNA binding protein b. (186 aa)
myef2Myelin expression factor 2. (557 aa)
lix1lSplicing factor 3b, subunit 4. (687 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
syncripSynaptotagmin binding, cytoplasmic RNA interacting protein, like. (544 aa)
rbm17RNA binding motif protein 17. (444 aa)
MYEF2Myelin expression factor 2-like. (557 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (248 aa)
pdcd7Programmed cell death 7. (514 aa)
htatsf1HIV-1 Tat specific factor 1. (444 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
cwf19l2CWF19 like cell cycle control factor 2. (922 aa)
cwf19l1CWF19 like cell cycle control factor 1. (551 aa)
ENSPMEP00000015070DUF1604 domain-containing protein. (97 aa)
ENSPMEP00000015289Serine/arginine repetitive matrix 4. (410 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (342 aa)
ENSPMEP00000015593DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (734 aa)
wbp11WW domain binding protein 11. (696 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
luc7l3Uncharacterized protein. (485 aa)
SNIP1Smad nuclear interacting protein 1. (364 aa)
DHX15DEAH-box helicase 15. (762 aa)
LOC106919282SMU1 DNA replication regulator and spliceosomal factor b. (508 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
luc7lLUC7-like (S. cerevisiae). (363 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
ess2Ess-2 splicing factor homolog. (475 aa)
plrg1Pleiotropic regulator 1. (513 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
cactinCactin. (853 aa)
sf3b1Splicing factor 3b, subunit 1. (1343 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
sf3a3Splicing factor 3a, subunit 3. (435 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (171 aa)
TRA2BTransformer 2 beta homolog. (283 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
mfap1Microfibril associated protein 1. (440 aa)
ccdc12Coiled-coil domain containing 12. (202 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
wbp4Uncharacterized protein. (434 aa)
LOC106917271DEAH (Asp-Glu-Ala-His) box helicase 15. (300 aa)
ZNF830Zinc finger protein 830. (335 aa)
cwc25CWC25 spliceosome associated protein homolog. (396 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (602 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
SUGP1SURP and G-patch domain containing 1. (637 aa)
prpf4bPre-mRNA processing factor 4Bb. (1014 aa)
gpkowG patch domain and KOW motifs. (519 aa)
LOC106930308Si:ch211-114c17.1. (721 aa)
LOC106927112U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (449 aa)
dhx35DEAH-box helicase 35. (699 aa)
prpf8Pre-mRNA processing factor 8. (2358 aa)
aqrAquarius intron-binding spliceosomal factor. (1471 aa)
prpf38bUncharacterized protein. (475 aa)
dqx1DEAQ box RNA-dependent ATPase 1. (837 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
cwc22CWC22 spliceosome associated protein homolog. (1002 aa)
adarAdenosine deaminase RNA specific. (1361 aa)
dnajc17DnaJ (Hsp40) homolog, subfamily C, member 17. (313 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1146 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1250 aa)
LOC106914995Zgc:103692. (293 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (667 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
wdr83WD repeat domain containing 83. (323 aa)
aar2AAR2 splicing factor. (358 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
mtrexMtr4 exosome RNA helicase. (948 aa)
rnf113aRing finger protein 113A. (322 aa)
WDR25WD repeat domain 25. (471 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (651 aa)
pnnPinin, desmosome associated protein. (667 aa)
syf2SYF2 pre-mRNA-splicing factor. (236 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
LOC106920762Zgc:158803. (421 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
snw1SNW domain containing 1. (536 aa)
sf3b2Splicing factor 3b, subunit 2. (855 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
shdSrc homology 2 domain containing transforming protein D, a. (417 aa)
yju2YJU2 splicing factor homolog. (341 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1253 aa)
LOC106925423RRM domain-containing protein. (346 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
LOC106924735Galectin. (373 aa)
LOC106928616RRM domain-containing protein. (320 aa)
DHX15-2Helicase ATP-binding domain-containing protein. (297 aa)
LOC106918726Survival of motor neuron 1, telomeric. (283 aa)
gpatch1G patch domain containing 1. (719 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
zcchc8Zinc finger, CCHC domain containing 8. (713 aa)
ENSPMEP00000032120Splicing factor 3a, subunit 1. (677 aa)
LOC106903466Galectin-5-like. (277 aa)
ENSPMEP00000032955SEC63 domain-containing protein. (153 aa)
rbmx2RNA binding motif protein X-linked 2. (299 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
ENSPMEP00000034198Uncharacterized protein. (44 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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