16 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106920762	Zgc:158803. (421 aa)
	ENSPMEP00000002318	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (218 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	luc7l3	Uncharacterized protein. (485 aa)
	luc7l	LUC7-like (S. cerevisiae). (363 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	prpf40a	PRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LOC106930308	Si:ch211-114c17.1. (721 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000002318	LOC106920762	ENSPMEP00000002318	ENSPMEP00000027698	Small nuclear ribonucleoprotein polypeptide F.	Zgc:158803.	0.891
ENSPMEP00000002318	LOC106930308	ENSPMEP00000002318	ENSPMEP00000022479	Small nuclear ribonucleoprotein polypeptide F.	Si:ch211-114c17.1.	0.847
ENSPMEP00000002318	SNRPN	ENSPMEP00000002318	ENSPMEP00000017808	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPMEP00000002318	luc7l	ENSPMEP00000002318	ENSPMEP00000017111	Small nuclear ribonucleoprotein polypeptide F.	LUC7-like (S. cerevisiae).	0.891
ENSPMEP00000002318	luc7l3	ENSPMEP00000002318	ENSPMEP00000016441	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.852
ENSPMEP00000002318	prpf39	ENSPMEP00000002318	ENSPMEP00000014588	Small nuclear ribonucleoprotein polypeptide F.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.849
ENSPMEP00000002318	snrpa	ENSPMEP00000002318	ENSPMEP00000010469	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptide A.	0.977
ENSPMEP00000002318	snrpb2	ENSPMEP00000002318	ENSPMEP00000008727	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptide B2.	0.977
ENSPMEP00000002318	snrpc	ENSPMEP00000002318	ENSPMEP00000026538	Small nuclear ribonucleoprotein polypeptide F.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.997
ENSPMEP00000002318	snrpd1	ENSPMEP00000002318	ENSPMEP00000033441	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSPMEP00000002318	snrpd2	ENSPMEP00000002318	ENSPMEP00000024021	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPMEP00000002318	snrpd3	ENSPMEP00000002318	ENSPMEP00000006921	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSPMEP00000002318	snrpe	ENSPMEP00000002318	ENSPMEP00000021559	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPMEP00000002318	snrpg	ENSPMEP00000002318	ENSPMEP00000016284	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
LOC106920762	ENSPMEP00000002318	ENSPMEP00000027698	ENSPMEP00000002318	Zgc:158803.	Small nuclear ribonucleoprotein polypeptide F.	0.891
LOC106920762	LOC106930308	ENSPMEP00000027698	ENSPMEP00000022479	Zgc:158803.	Si:ch211-114c17.1.	0.806
LOC106920762	SNRPN	ENSPMEP00000027698	ENSPMEP00000017808	Zgc:158803.	Small nuclear ribonucleoprotein-associated protein.	0.756
LOC106920762	luc7l3	ENSPMEP00000027698	ENSPMEP00000016441	Zgc:158803.	Uncharacterized protein.	0.594
LOC106920762	prpf39	ENSPMEP00000027698	ENSPMEP00000014588	Zgc:158803.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.806
LOC106920762	prpf40a	ENSPMEP00000027698	ENSPMEP00000019181	Zgc:158803.	PRP40 pre-mRNA processing factor 40 homolog A.	0.598