(13 nodes) poly(A)+ mRNA export from nucleus network (Poecilia mexicana)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gle1	GLE1 RNA export mediator. (747 aa)
	poldip3	Polymerase (DNA-directed), delta interacting protein 3. (487 aa)
	LOC106921813	Zgc:193690. (487 aa)
	LOC106906168	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (596 aa)
	IWS1	Interacts with SUPT6H, CTD assembly factor 1. (721 aa)
	nxf1	Zgc:153681. (666 aa)
	pcid2	PCI domain containing 2. (399 aa)
	sarnp	SAP domain containing ribonucleoprotein. (211 aa)
	nup133	Nucleoporin 133. (1135 aa)
	LOC106908523	Zgc:193690. (445 aa)
	ENSPMEP00000020113	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (444 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (2223 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000020113	gle1	ENSPMEP00000020113	ENSPMEP00000029584	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	GLE1 RNA export mediator.	0.888
ENSPMEP00000020113	nup133	ENSPMEP00000020113	ENSPMEP00000015159	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nucleoporin 133.	0.981
ENSPMEP00000020113	nup93	ENSPMEP00000020113	ENSPMEP00000001716	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.922
ENSPMEP00000020113	nxf1	ENSPMEP00000020113	ENSPMEP00000002668	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Zgc:153681.	0.873
ENSPMEP00000020113	poldip3	ENSPMEP00000020113	ENSPMEP00000031267	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	Polymerase (DNA-directed), delta interacting protein 3.	0.722
IWS1	nxf1	ENSPMEP00000001787	ENSPMEP00000002668	Interacts with SUPT6H, CTD assembly factor 1.	Zgc:153681.	0.445
IWS1	poldip3	ENSPMEP00000001787	ENSPMEP00000031267	Interacts with SUPT6H, CTD assembly factor 1.	Polymerase (DNA-directed), delta interacting protein 3.	0.415
LOC106906168	LOC106908523	ENSPMEP00000000167	ENSPMEP00000016168	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	Zgc:193690.	0.899
LOC106906168	LOC106921813	ENSPMEP00000000167	ENSPMEP00000034072	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	Zgc:193690.	0.899
LOC106906168	gle1	ENSPMEP00000000167	ENSPMEP00000029584	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	GLE1 RNA export mediator.	0.906
LOC106906168	mcm3ap	ENSPMEP00000000167	ENSPMEP00000026302	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	Minichromosome maintenance complex component 3 associated protein.	0.473
LOC106906168	nxf1	ENSPMEP00000000167	ENSPMEP00000002668	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	Zgc:153681.	0.735
LOC106906168	poldip3	ENSPMEP00000000167	ENSPMEP00000031267	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	Polymerase (DNA-directed), delta interacting protein 3.	0.404
LOC106908523	LOC106906168	ENSPMEP00000016168	ENSPMEP00000000167	Zgc:193690.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.899
LOC106908523	gle1	ENSPMEP00000016168	ENSPMEP00000029584	Zgc:193690.	GLE1 RNA export mediator.	0.906
LOC106908523	mcm3ap	ENSPMEP00000016168	ENSPMEP00000026302	Zgc:193690.	Minichromosome maintenance complex component 3 associated protein.	0.472
LOC106908523	nxf1	ENSPMEP00000016168	ENSPMEP00000002668	Zgc:193690.	Zgc:153681.	0.735
LOC106908523	poldip3	ENSPMEP00000016168	ENSPMEP00000031267	Zgc:193690.	Polymerase (DNA-directed), delta interacting protein 3.	0.404
LOC106921813	LOC106906168	ENSPMEP00000034072	ENSPMEP00000000167	Zgc:193690.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.899
LOC106921813	gle1	ENSPMEP00000034072	ENSPMEP00000029584	Zgc:193690.	GLE1 RNA export mediator.	0.906