(26 nodes) Virion assembly network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106928455	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (508 aa)
	rab1a	Uncharacterized protein. (203 aa)
	LOC106924445	ZRAB1B, member RAS oncogene family a. (205 aa)
	LOC106904543	MABP domain-containing protein. (230 aa)
	LOC106917326	Zgc:171927. (220 aa)
	LOC106917343	Zgc:123278. (186 aa)
	lrsam1	Leucine rich repeat and sterile alpha motif containing 1. (748 aa)
	mvb12b	Multivesicular body subunit 12Ba. (238 aa)
	LOC106908261	Vacuolar protein sorting-associated protein 4A. (436 aa)
	LOC106911433	Uncharacterized protein. (215 aa)
	vta1	Vesicle (multivesicular body) trafficking 1. (320 aa)
	usp6nl	USP6 N-terminal like. (875 aa)
	tbc1d20	TBC1 domain family, member 20. (397 aa)
	ENSPMEP00000028852	Lipoyl-binding domain-containing protein. (299 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (885 aa)
	tsg101	Tumor susceptibility 101a. (390 aa)
	LOC106905440	Si:ch211-288d18.1. (534 aa)
	LOC106923631	Apolipoprotein Ea. (251 aa)
	LOC106908506	Apolipoprotein Eb. (265 aa)
	LOC106906387	Uncharacterized protein; Belongs to the AAA ATPase family. (435 aa)
	LOC106927356	Si:dkeyp-19e1.3. (827 aa)
	LOC106916853	Zgc:63863. (409 aa)
	ENSPMEP00000007759	MABP domain-containing protein. (103 aa)
	ENSPMEP00000005137	Uncharacterized protein. (226 aa)
	LOC106922030	Uncharacterized protein. (282 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000005137	ENSPMEP00000028852	ENSPMEP00000005137	ENSPMEP00000028852	Uncharacterized protein.	Lipoyl-binding domain-containing protein.	0.930
ENSPMEP00000007759	LOC106904543	ENSPMEP00000007759	ENSPMEP00000022208	MABP domain-containing protein.	MABP domain-containing protein.	0.934
ENSPMEP00000007759	LOC106917343	ENSPMEP00000007759	ENSPMEP00000018015	MABP domain-containing protein.	Zgc:123278.	0.930
ENSPMEP00000007759	LOC106922030	ENSPMEP00000007759	ENSPMEP00000004593	MABP domain-containing protein.	Uncharacterized protein.	0.942
ENSPMEP00000007759	pdcd6ip	ENSPMEP00000007759	ENSPMEP00000028972	MABP domain-containing protein.	Programmed cell death 6 interacting protein.	0.918
ENSPMEP00000007759	tsg101	ENSPMEP00000007759	ENSPMEP00000032797	MABP domain-containing protein.	Tumor susceptibility 101a.	0.930
ENSPMEP00000007759	vta1	ENSPMEP00000007759	ENSPMEP00000025202	MABP domain-containing protein.	Vesicle (multivesicular body) trafficking 1.	0.438
ENSPMEP00000028852	ENSPMEP00000005137	ENSPMEP00000028852	ENSPMEP00000005137	Lipoyl-binding domain-containing protein.	Uncharacterized protein.	0.930
LOC106904543	ENSPMEP00000007759	ENSPMEP00000022208	ENSPMEP00000007759	MABP domain-containing protein.	MABP domain-containing protein.	0.934
LOC106904543	LOC106917343	ENSPMEP00000022208	ENSPMEP00000018015	MABP domain-containing protein.	Zgc:123278.	0.930
LOC106904543	LOC106922030	ENSPMEP00000022208	ENSPMEP00000004593	MABP domain-containing protein.	Uncharacterized protein.	0.943
LOC106904543	mvb12b	ENSPMEP00000022208	ENSPMEP00000017004	MABP domain-containing protein.	Multivesicular body subunit 12Ba.	0.935
LOC106904543	pdcd6ip	ENSPMEP00000022208	ENSPMEP00000028972	MABP domain-containing protein.	Programmed cell death 6 interacting protein.	0.935
LOC106904543	tsg101	ENSPMEP00000022208	ENSPMEP00000032797	MABP domain-containing protein.	Tumor susceptibility 101a.	0.930
LOC106904543	vta1	ENSPMEP00000022208	ENSPMEP00000025202	MABP domain-containing protein.	Vesicle (multivesicular body) trafficking 1.	0.438
LOC106906387	LOC106908261	ENSPMEP00000014341	ENSPMEP00000023054	Uncharacterized protein; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4A.	0.899
LOC106906387	LOC106917343	ENSPMEP00000014341	ENSPMEP00000018015	Uncharacterized protein; Belongs to the AAA ATPase family.	Zgc:123278.	0.558
LOC106906387	LOC106928455	ENSPMEP00000014341	ENSPMEP00000017594	Uncharacterized protein; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.	0.899
LOC106906387	VPS4B	ENSPMEP00000014341	ENSPMEP00000004443	Uncharacterized protein; Belongs to the AAA ATPase family.	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.	0.920
LOC106906387	pdcd6ip	ENSPMEP00000014341	ENSPMEP00000028972	Uncharacterized protein; Belongs to the AAA ATPase family.	Programmed cell death 6 interacting protein.	0.795