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snrnp40 snrnp40 htatsf1 htatsf1 prpf39 prpf39 LSM11 LSM11 LOC106912892 LOC106912892 snrpg snrpg luc7l3 luc7l3 lsm2 lsm2 sf3b3 sf3b3 luc7l luc7l sf3b5 sf3b5 SNRPN SNRPN sf3b1 sf3b1 snrnp200 snrnp200 sf3a3 sf3a3 prpf40a prpf40a lsm5 lsm5 txnl4b txnl4b zmat2 zmat2 snrpe snrpe LOC106930308 LOC106930308 prpf8 prpf8 prpf18 prpf18 snrpd2 snrpd2 LSM10 LSM10 txnl4a txnl4a sf3a2 sf3a2 snrpc snrpc LOC106920762 LOC106920762 sf3b2 sf3b2 ddx23 ddx23 lsm4 lsm4 prpf31 prpf31 ENSPMEP00000032120 ENSPMEP00000032120 ENSPMEP00000032955 ENSPMEP00000032955 rbmx2 rbmx2 snrpd1 snrpd1 lsm3 lsm3 lsm8 lsm8 snu13 snu13 ENSPMEP00000034198 ENSPMEP00000034198 prpf3 prpf3 SART1 SART1 snrpa snrpa LOC106931424 LOC106931424 lsm7 lsm7 snrpb2 snrpb2 phf5a phf5a prpf6 prpf6 snrpd3 snrpd3 larp7 larp7 prpf4 prpf4 eftud2 eftud2 sf3b6 sf3b6 lsm6 lsm6 ENSPMEP00000002318 ENSPMEP00000002318 cd2bp2 cd2bp2 usp39 usp39 ENSPMEP00000000741 ENSPMEP00000000741 snrpa1 snrpa1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
htatsf1HIV-1 Tat specific factor 1. (444 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (768 aa)
LSM11LSM11, U7 small nuclear RNA associated. (228 aa)
LOC106912892U7 snRNA-associated Sm-like protein LSm11. (228 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
luc7l3Uncharacterized protein. (485 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
luc7lLUC7-like (S. cerevisiae). (363 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
sf3b1Splicing factor 3b, subunit 1. (1343 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
sf3a3Splicing factor 3a, subunit 3. (435 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (883 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
LOC106930308Si:ch211-114c17.1. (721 aa)
prpf8Pre-mRNA processing factor 8. (2358 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LSM10LSM10, U7 small nuclear RNA associated. (115 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
LOC106920762Zgc:158803. (421 aa)
sf3b2Splicing factor 3b, subunit 2. (855 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
ENSPMEP00000032120Splicing factor 3a, subunit 1. (677 aa)
ENSPMEP00000032955SEC63 domain-containing protein. (153 aa)
rbmx2RNA binding motif protein X-linked 2. (299 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
lsm3LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
ENSPMEP00000034198Uncharacterized protein. (44 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (218 aa)
LOC106931424Zgc:153119. (295 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (113 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (220 aa)
phf5aPHD finger protein 5A. (110 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
larp7La ribonucleoprotein domain family, member 7. (558 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
ENSPMEP00000002318Small nuclear ribonucleoprotein polypeptide F. (85 aa)
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (378 aa)
usp39Ubiquitin specific peptidase 39. (512 aa)
ENSPMEP00000000741WD_REPEATS_REGION domain-containing protein. (121 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (248 aa)
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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