36 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMEP00000032465	Whirlin a. (473 aa)
	cetn2	Centrin, EF-hand protein, 2. (229 aa)
	iqcb1	IQ motif containing B1. (602 aa)
	LOC106933061	RPGR interacting protein 1. (1329 aa)
	cfap410	Cilia and flagella associated protein 410. (260 aa)
	ENSPMEP00000004356	RP1 axonemal microtubule associated. (235 aa)
	LOC106911347	ABC_transp_aux domain-containing protein. (204 aa)
	rpgrip1l	RPGRIP1 like. (1263 aa)
	wdr19	WD repeat domain 19. (1324 aa)
	spata7	Uncharacterized protein. (581 aa)
	ttc8	Tetratricopeptide repeat domain 8. (505 aa)
	kifap3	Kinesin-associated protein 3a. (773 aa)
	LOC106910184	Usher syndrome 2A (autosomal recessive, mild). (4797 aa)
	ENSPMEP00000010849	PDZ domain-containing protein. (108 aa)
	LOC106926756	Lebercilin LCA5. (658 aa)
	ift140	Intraflagellar transport 140 homolog (Chlamydomonas). (1441 aa)
	LOC106926030	Uncharacterized protein. (166 aa)
	topors	Topoisomerase I binding, arginine/serine-rich a. (724 aa)
	nphp4	Uncharacterized protein. (1441 aa)
	ift52	Intraflagellar transport 52 homolog (Chlamydomonas). (435 aa)
	LOC106910818	C2 domain-containing protein. (1204 aa)
	bbs4	Bardet-Biedl syndrome 4. (498 aa)
	LOC106914663	Uncharacterized protein. (2167 aa)
	ENSPMEP00000021595	PDZ domain-containing protein. (132 aa)
	kif17	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (792 aa)
	fam161a	FAM161 centrosomal protein A. (668 aa)
	tbcc	Tubulin folding cofactor C. (343 aa)
	arl3	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family. (208 aa)
	LOC106920189	Kinesin-associated protein 3b. (777 aa)
	LOC106905815	Uncharacterized protein. (574 aa)
	LOC106924837	Centrin 4. (171 aa)
	LOC106917417	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (212 aa)
	LOC106928566	RING-type domain-containing protein. (1458 aa)
	LOC106926029	Uncharacterized protein. (177 aa)
	LOC106916078	Uncharacterized protein. (277 aa)
	LOC106923265	Lebercilin LCA5. (808 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000004356	LOC106914663	ENSPMEP00000004356	ENSPMEP00000020480	RP1 axonemal microtubule associated.	Uncharacterized protein.	0.690
ENSPMEP00000004356	bbs4	ENSPMEP00000004356	ENSPMEP00000020312	RP1 axonemal microtubule associated.	Bardet-Biedl syndrome 4.	0.454
ENSPMEP00000004356	ttc8	ENSPMEP00000004356	ENSPMEP00000009950	RP1 axonemal microtubule associated.	Tetratricopeptide repeat domain 8.	0.487
ENSPMEP00000010849	LOC106910184	ENSPMEP00000010849	ENSPMEP00000010529	PDZ domain-containing protein.	Usher syndrome 2A (autosomal recessive, mild).	0.496
ENSPMEP00000010849	LOC106911347	ENSPMEP00000010849	ENSPMEP00000005549	PDZ domain-containing protein.	ABC_transp_aux domain-containing protein.	0.513
ENSPMEP00000010849	ift52	ENSPMEP00000010849	ENSPMEP00000017168	PDZ domain-containing protein.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.513
ENSPMEP00000010849	rpgrip1l	ENSPMEP00000010849	ENSPMEP00000006462	PDZ domain-containing protein.	RPGRIP1 like.	0.506
ENSPMEP00000021595	LOC106910184	ENSPMEP00000021595	ENSPMEP00000010529	PDZ domain-containing protein.	Usher syndrome 2A (autosomal recessive, mild).	0.496
ENSPMEP00000021595	LOC106911347	ENSPMEP00000021595	ENSPMEP00000005549	PDZ domain-containing protein.	ABC_transp_aux domain-containing protein.	0.513
ENSPMEP00000021595	ift52	ENSPMEP00000021595	ENSPMEP00000017168	PDZ domain-containing protein.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.513
ENSPMEP00000021595	rpgrip1l	ENSPMEP00000021595	ENSPMEP00000006462	PDZ domain-containing protein.	RPGRIP1 like.	0.506
ENSPMEP00000032465	LOC106910184	ENSPMEP00000032465	ENSPMEP00000010529	Whirlin a.	Usher syndrome 2A (autosomal recessive, mild).	0.496
ENSPMEP00000032465	LOC106911347	ENSPMEP00000032465	ENSPMEP00000005549	Whirlin a.	ABC_transp_aux domain-containing protein.	0.513
ENSPMEP00000032465	ift52	ENSPMEP00000032465	ENSPMEP00000017168	Whirlin a.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.513
ENSPMEP00000032465	rpgrip1l	ENSPMEP00000032465	ENSPMEP00000006462	Whirlin a.	RPGRIP1 like.	0.506
LOC106905815	LOC106910184	ENSPMEP00000027977	ENSPMEP00000010529	Uncharacterized protein.	Usher syndrome 2A (autosomal recessive, mild).	0.496
LOC106905815	LOC106911347	ENSPMEP00000027977	ENSPMEP00000005549	Uncharacterized protein.	ABC_transp_aux domain-containing protein.	0.513
LOC106905815	ift52	ENSPMEP00000027977	ENSPMEP00000017168	Uncharacterized protein.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.513
LOC106905815	rpgrip1l	ENSPMEP00000027977	ENSPMEP00000006462	Uncharacterized protein.	RPGRIP1 like.	0.506
LOC106910184	ENSPMEP00000010849	ENSPMEP00000010529	ENSPMEP00000010849	Usher syndrome 2A (autosomal recessive, mild).	PDZ domain-containing protein.	0.496